Literature DB >> 29128695

Insights from structures of cancer-relevant pre-mRNA splicing factors.

Clara L Kielkopf1.   

Abstract

Pre-mRNA splicing factors recognize consensus signals within preliminary transcripts, and as cogs of the spliceosome machine, orchestrate the excision and rejoining of pre-mRNA regions for gene expression. Large-scale sequencing has demonstrated that mutations in key genes encoding pre-mRNA splicing factors are common among myeloid neoplasms and also occur in a variety of other cancers. This revelation offers new therapeutic opportunities to target pre-mRNA splicing vulnerabilities in hematologic and other malignancies. The mutated residues typically alter 3' splice site choice for a subset of transcripts. In this review, we highlight mechanistic insights from recent 3D structures that reveal the affected residues poised for pre-mRNA recognition.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 29128695      PMCID: PMC5871561          DOI: 10.1016/j.gde.2017.10.008

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  96 in total

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Authors:  Haihong Shen; Xuexiu Zheng; Stephan Luecke; Michael R Green
Journal:  Genes Dev       Date:  2010-11-01       Impact factor: 11.361

2.  Mammalian polycomb-mediated repression of Hox genes requires the essential spliceosomal protein Sf3b1.

Authors:  Kyoichi Isono; Yoko Mizutani-Koseki; Toshihisa Komori; Marion S Schmidt-Zachmann; Haruhiko Koseki
Journal:  Genes Dev       Date:  2005-03-01       Impact factor: 11.361

3.  The anti-tumor drug E7107 reveals an essential role for SF3b in remodeling U2 snRNP to expose the branch point-binding region.

Authors:  Eric G Folco; Kaitlyn E Coil; Robin Reed
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

4.  Structure of a yeast step II catalytically activated spliceosome.

Authors:  Chuangye Yan; Ruixue Wan; Rui Bai; Gaoxingyu Huang; Yigong Shi
Journal:  Science       Date:  2016-12-15       Impact factor: 47.728

5.  Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.

Authors:  Karl Bertram; Dmitry E Agafonov; Olexandr Dybkov; David Haselbach; Majety N Leelaram; Cindy L Will; Henning Urlaub; Berthold Kastner; Reinhard Lührmann; Holger Stark
Journal:  Cell       Date:  2017-08-03       Impact factor: 41.582

6.  Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A.

Authors:  Anna Corrionero; Belén Miñana; Juan Valcárcel
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

7.  Exome sequencing identifies recurrent somatic mutations in EIF1AX and SF3B1 in uveal melanoma with disomy 3.

Authors:  Marcel Martin; Lars Maßhöfer; Petra Temming; Sven Rahmann; Claudia Metz; Norbert Bornfeld; Johannes van de Nes; Ludger Klein-Hitpass; Alan G Hinnebusch; Bernhard Horsthemke; Dietmar R Lohmann; Michael Zeschnigk
Journal:  Nat Genet       Date:  2013-06-23       Impact factor: 38.330

8.  Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing.

Authors:  Marcin Imielinski; Alice H Berger; Peter S Hammerman; Bryan Hernandez; Trevor J Pugh; Eran Hodis; Jeonghee Cho; James Suh; Marzia Capelletti; Andrey Sivachenko; Carrie Sougnez; Daniel Auclair; Michael S Lawrence; Petar Stojanov; Kristian Cibulskis; Kyusam Choi; Luc de Waal; Tanaz Sharifnia; Angela Brooks; Heidi Greulich; Shantanu Banerji; Thomas Zander; Danila Seidel; Frauke Leenders; Sascha Ansén; Corinna Ludwig; Walburga Engel-Riedel; Erich Stoelben; Jürgen Wolf; Chandra Goparju; Kristin Thompson; Wendy Winckler; David Kwiatkowski; Bruce E Johnson; Pasi A Jänne; Vincent A Miller; William Pao; William D Travis; Harvey I Pass; Stacey B Gabriel; Eric S Lander; Roman K Thomas; Levi A Garraway; Gad Getz; Matthew Meyerson
Journal:  Cell       Date:  2012-09-14       Impact factor: 41.582

9.  An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype.

Authors:  Irina M Shapiro; Albert W Cheng; Nicholas C Flytzanis; Michele Balsamo; John S Condeelis; Maja H Oktay; Christopher B Burge; Frank B Gertler
Journal:  PLoS Genet       Date:  2011-08-18       Impact factor: 5.917

10.  U2AF1 mutations alter splice site recognition in hematological malignancies.

Authors:  Janine O Ilagan; Aravind Ramakrishnan; Brian Hayes; Michele E Murphy; Ahmad S Zebari; Philip Bradley; Robert K Bradley
Journal:  Genome Res       Date:  2014-09-29       Impact factor: 9.043

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  10 in total

Review 1.  Targeting mRNA processing as an anticancer strategy.

Authors:  Joana Desterro; Pedro Bak-Gordon; Maria Carmo-Fonseca
Journal:  Nat Rev Drug Discov       Date:  2019-09-25       Impact factor: 84.694

2.  U2AF1 mutation types in primary myelofibrosis: phenotypic and prognostic distinctions.

Authors:  Ayalew Tefferi; Christy M Finke; Terra L Lasho; Curtis A Hanson; Rhett P Ketterling; Naseema Gangat; Animesh Pardanani
Journal:  Leukemia       Date:  2018-02-27       Impact factor: 11.528

3.  The splicing factor U2AF1 contributes to cancer progression through a noncanonical role in translation regulation.

Authors:  Murali Palangat; Dimitrios G Anastasakis; Dennis Liang Fei; Katherine E Lindblad; Robert Bradley; Christopher S Hourigan; Markus Hafner; Daniel R Larson
Journal:  Genes Dev       Date:  2019-03-06       Impact factor: 11.361

Review 4.  Mutations in spliceosome genes and therapeutic opportunities in myeloid malignancies.

Authors:  Justin Taylor; Stanley C Lee
Journal:  Genes Chromosomes Cancer       Date:  2019-09-03       Impact factor: 5.006

Review 5.  The SF3b complex: splicing and beyond.

Authors:  Chengfu Sun
Journal:  Cell Mol Life Sci       Date:  2020-03-05       Impact factor: 9.261

6.  Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal.

Authors:  Eliezra Glasser; Debanjana Maji; Giulia Biancon; Anees Mohammed Keedakkatt Puthenpeedikakkal; Chapin E Cavender; Toma Tebaldi; Jermaine L Jenkins; David H Mathews; Stephanie Halene; Clara L Kielkopf
Journal:  Nucleic Acids Res       Date:  2022-05-20       Impact factor: 19.160

Review 7.  Regulating Divergent Transcriptomes through mRNA Splicing and Its Modulation Using Various Small Compounds.

Authors:  Ken-Ichi Fujita; Takaki Ishizuka; Mizuki Mitsukawa; Masashi Kurata; Seiji Masuda
Journal:  Int J Mol Sci       Date:  2020-03-16       Impact factor: 5.923

Review 8.  Blood Relatives: Splicing Mechanisms underlying Erythropoiesis in Health and Disease.

Authors:  Kirsten A Reimer; Karla M Neugebauer
Journal:  F1000Res       Date:  2018-08-30

Review 9.  SRSF2 mutations in myelodysplasia/myeloproliferative neoplasms.

Authors:  Katherine Linder; Chaitanya Iragavarapu; Amandeep Aujla; Michael Karass; Delong Liu
Journal:  Biomark Res       Date:  2018-09-26

10.  Functional analysis of Hsh155/SF3b1 interactions with the U2 snRNA/branch site duplex.

Authors:  Tucker J Carrocci; Joshua C Paulson; Aaron A Hoskins
Journal:  RNA       Date:  2018-05-11       Impact factor: 4.942

  10 in total

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