| Literature DB >> 25126410 |
Ying-Ju Lin1,2, Chia-Yen Chen3, Kuan-Teh Jeang4, Xiang Liu4, Jen-Hsien Wang5, Chien-Hui Hung6, Hsinyi Tsang7, Ting-Hsu Lin1, Chiu-Chu Liao1, Shao-Mei Huang1, Cheng-Wen Lin8, Mao-Wang Ho5, Wen-Kuei Chien9,10, Jin-Hua Chen9,10, Tsung-Jung Ho2,11,12, Fuu-Jen Tsai1,2,13.
Abstract
BACKGROUND: The human immunodeficiency virus (HIV-1) exploits host proteins to complete its life cycle. Genome-wide siRNA approaches suggested that host proteins affect HIV-1 replication. However, the results barely overlapped. RING finger protein 39 (RNF39) has been identified from genome-wide association studies. However, its function during HIV-1 replication remains unclear. METHODS ANDEntities:
Keywords: HIV-1 viral load; RNF39; Single nucleotide polymorphism; Viral replication
Year: 2014 PMID: 25126410 PMCID: PMC4131809 DOI: 10.1186/2045-3701-4-40
Source DB: PubMed Journal: Cell Biosci ISSN: 2045-3701 Impact factor: 7.133
Baseline characteristics of patients with HIV-1 in the Han Chinese population in Taiwan
| No. of participants | 303 |
| Male,% | 87.3 |
| Mean age at HIV-1 positive (range), yearsa | 37.0 (20.6–78.7) |
| Mean plasma HIV-1 viral load (interquartile range), log10 copies/mLb | 4.0 (2.6–6.4) |
aThe age at HIV-1 antibody positive means the age of the patient when he/she was examined with the earliest HIV-1 antibody positive result. The HIV-1 antibody positive results were obtained from the department of medical and laboratory examination database at our hospital.
bThe HIV-1 viral load was measured in peripheral blood when the patient was examined with the earliest HIV-1 antibody positive result. Any measurements taken after the initiation of antiretroviral therapy were not used in any analyses.
Effects of gene SNPs on plasma HIV-1 viral load in the Han Chinese Population in Taiwan
| 5′ near gene | 30,043,779 | SNP1 | rs3807032 | GG* | 219 (72.3) | 3.9 (2.6–6.4) | ||
| | | | | | CG + CC | 74 (24.4) + 10 (3.3) | 4.2 (2.6–5.8) | |
| | 5′ near gene | 30,043,955 | SNP2 | rs3807033 | GG* | 220 (72.6) | 3.9 (2.6–6.4) | |
| | | | | | AG + AA | 73 (24.1) + 10 (3.3) | 4.2 (2.6–5.8) | |
| | 5′ near gene | 30,044,388 | SNP3 | rs3132682 | CC* | 95 (31.4) | 3.9 (2.6–5.3) | 0.299 |
| | | | | | CG + GG | 127 (41.9) + 81 (26.7) | 4.0 (2.6–6.4) | |
| | 5′ near gene | 30,044,827 | SNP4 | rs3807035 | GG* | 202 (66.7) | 3.9 (2.6–6.4) | 0.034 |
| | | | | | AG + AA | 89 (29.4) + 12 (4.0) | 4.1 (2.6–5.8) | |
| | 5′ near gene | 30,044,914 | SNP5 | rs3807036 | GG* | 283 (93.4) | 4.0 (2.6–6.4) | 0.199 |
| | | | | | AG + AA | 20 (6.6) + 0 (0.0) | 3.7 (2.6–4.8) | |
| | 5′ near gene | 30,045,199 | SNP6 | rs1150735 | GG* | 159 (52.5) | 3.9 (2.6–5.3) | 0.837 |
| AG + AA | 114 (37.6) + 30 (9.9) | 4.0 (2.6–6.4) | ||||||
The asterisk and bold, emphasizing statistical significance at p < 0.0083 (0.05/6).
aThe HIV-1 viral load was measured in the peripheral blood when the patient was examined with the earliest HIV-1 antibody positive result. Any measurements taken after the initiation of antiretroviral therapy were not used in any analyses.
bp-values were obtained using the unpaired Student’s t-test.
Effects of haplotypes on plasma HIV-1 viral load in the Han Chinese Population in Taiwan
| Ht1 (GG/GG, n (%)) | 125 (73.5) | 3.9 (2.6–6.4) | |
| Ht2 (GG/CA, n (%)) | 43 (25.3) | 4.2 (2.6–5.8) | |
| Ht3 (CA/CA, n (%)) | 2 (1.2) |
The asterisk and bold, emphasizing statistical significance at p < 0.017 (0.05/3).
SNP1, rs3807032; SNP2, rs3807033.
aThe HIV-1 viral load was measured in the peripheral blood when the patient was examined with the earliest HIV-1 antibody positive result. Any measurements taken after the initiation of antiretroviral therapy were not used in any analyses.
bp-values were obtained using the unpaired Student’s t-test.
Figure 1mRNA expression levels in PBMCs between the haplotypes.RNF39 relative expression was detected by qPCR, and its expression in individuals with the ht1-GG/GG haplotype was compared with that in individuals with the ht2-GG/CA and ht3-CA/CA haplotypes. The relative expression levels were expressed as RNF39 mRNA/HPRT mRNA ratio.
Figure 2RNF39 protein effects on HIV-1 replication in 293 T cells by using RNA interference assay. A. RNF39 mRNA downregulation by RNA interference in 293 T cells. Relative RNF39 mRNA was quantified by qPCR. Values are normalized to those of siNC-transfected cells. Data represent the mean ± SD of three independent experiments. B. Reduction of HIV-1 infection via RNF39 knockdown in 293 T cells. AZT-treated 293 T cells were used as a positive control for the reduction of HIV-1 infection.
Figure 3RNF39 protein effects on HIV-1 replication in 293 T cells as evaluated by cDNA overexpression technique. A. RNF39 mRNA overexpression in 293 T cells by using the RNF39 cDNA vector under CMV promoter control. RNF39 relative mRNA expression was quantified by qPCR. Values are normalized to those of pCMV-transfected cells. Data represent the mean ± SD of three independent experiments. B. Enrichment of HIV-1 infection via RNF39 overexpression in 293 T cells. C. Enrichment of HIV-1 infection via RNF39 overexpression in siRNF39-pZNRD1- and siRNF39-pRNF39-transfected 293 T cells.
Figure 4RNF39 protein effects on HIV-1 replication in Jurkat cells as evaluated by RNA interference assay. A. Flowchart depicting siRNA effect on the replication of retroviruses (HIV-1 molecular clone pNL4-3 and HTLV-1 molecular clone k30). B. Inhibition of HIV-1 replication by RNF39 downregulation in Jurkat cells, measured using western blot analysis. C. Reduction of HIV-1 p24 antigen levels in culture supernatants from siRNF39-transfected Jurkat cells compared with culture supernatants from siNC-transfected cells, measured using HIV-1 p24 ELISA. D. No significant reduction of HTLV-1 p19 antigen levels was observed in culture supernatants from siRNAs-transfected Jurkat cells, measured using HTLV-1 p19 ELISA.