Literature DB >> 25110021

Endogenous siRNAs: regulators of internal affairs.

Monica J Piatek1, Andreas Werner1.   

Abstract

Endo-siRNAs (endogenous small-interfering RNAs) have recently emerged as versatile regulators of gene expression. They derive from double-stranded intrinsic transcripts and are processed by Dicer and associate with Argonaute proteins. In Caenorhabditis elegans, endo-siRNAs are known as 22G and 26G RNAs and are involved in genome protection and gene regulation. Drosophila melanogaster endo-siRNAs are produced with the help of specific Dicer and Argonaute isoforms and play an essential role in transposon control and the protection from viral infections. Biological functions of endo-siRNAs in vertebrates include repression of transposable elements and chromatin organization, as well as gene regulation at the transcriptional and post-transcriptional levels.

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Year:  2014        PMID: 25110021      PMCID: PMC4289821          DOI: 10.1042/BST20140068

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  54 in total

1.  Endogenous nuclear RNAi mediates behavioral adaptation to odor.

Authors:  Bi-Tzen Juang; Chen Gu; Linda Starnes; Francesca Palladino; Andrei Goga; Scott Kennedy; Noelle D L'Etoile
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

2.  Is this mine? small RNAs help to decide.

Authors:  Bruno F M de Albuquerque; René F Ketting
Journal:  Dev Cell       Date:  2013-12-23       Impact factor: 12.270

3.  Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans.

Authors:  J Graham Ruby; Calvin Jan; Christopher Player; Michael J Axtell; William Lee; Chad Nusbaum; Hui Ge; David P Bartel
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

4.  Transposon defense in Drosophila somatic cells: a model for distinction of self and non-self in the genome.

Authors:  Klaus Förstemann
Journal:  RNA Biol       Date:  2010-03-28       Impact factor: 4.652

5.  Microarray analysis of Drosophila dicer-2 mutants reveals potential regulation of mitochondrial metabolism by endogenous siRNAs.

Authors:  Do-Hwan Lim; Langho Lee; Chun-Taek Oh; Nam-Hoon Kim; Seungwoo Hwang; Sung-Jun Han; Young Sik Lee
Journal:  J Cell Biochem       Date:  2013-02       Impact factor: 4.429

6.  Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans.

Authors:  B Wightman; I Ha; G Ruvkun
Journal:  Cell       Date:  1993-12-03       Impact factor: 41.582

Review 7.  Biology and Mechanisms of Short RNAs in Caenorhabditis elegans.

Authors:  Alla Grishok
Journal:  Adv Genet       Date:  2013       Impact factor: 1.944

8.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

9.  Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Authors:  Weifeng Gu; Masaki Shirayama; Darryl Conte; Jessica Vasale; Pedro J Batista; Julie M Claycomb; James J Moresco; Elaine M Youngman; Jennifer Keys; Matthew J Stoltz; Chun-Chieh G Chen; Daniel A Chaves; Shenghua Duan; Kristin D Kasschau; Noah Fahlgren; John R Yates; Shohei Mitani; James C Carrington; Craig C Mello
Journal:  Mol Cell       Date:  2009-10-01       Impact factor: 17.970

10.  The C. elegans CSR-1 argonaute pathway counteracts epigenetic silencing to promote germline gene expression.

Authors:  Meetu Seth; Masaki Shirayama; Weifeng Gu; Takao Ishidate; Darryl Conte; Craig C Mello
Journal:  Dev Cell       Date:  2013-12-23       Impact factor: 12.270

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  25 in total

1.  Degradation of the Repetitive Genomic Landscape in a Close Relative of Caenorhabditis elegans.

Authors:  Gavin C Woodruff; Anastasia A Teterina
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

Review 2.  Retrotransposons as regulators of gene expression.

Authors:  Reyad A Elbarbary; Bronwyn A Lucas; Lynne E Maquat
Journal:  Science       Date:  2016-02-11       Impact factor: 47.728

3.  Disentangling the aging gene expression network of termite queens.

Authors:  José Manuel Monroy Kuhn; Karen Meusemann; Judith Korb
Journal:  BMC Genomics       Date:  2021-05-11       Impact factor: 3.969

Review 4.  RNA-mediated communication between helminths and their hosts: The missing links.

Authors:  Julie Claycomb; Cei Abreu-Goodger; Amy H Buck
Journal:  RNA Biol       Date:  2017-01-26       Impact factor: 4.652

Review 5.  'Lnc'-ing Wnt in female reproductive cancers: therapeutic potential of long non-coding RNAs in Wnt signalling.

Authors:  Mei S Ong; Wanpei Cai; Yi Yuan; Hin C Leong; Tuan Z Tan; Asad Mohammad; Ming L You; Frank Arfuso; Boon C Goh; Sudha Warrier; Gautam Sethi; Nicholas S Tolwinski; Peter E Lobie; Celestial T Yap; Shing C Hooi; Ruby Y Huang; Alan P Kumar
Journal:  Br J Pharmacol       Date:  2017-08-23       Impact factor: 8.739

6.  The origin of RNA interference: Adaptive or neutral evolution?

Authors:  Alessandro Torri; Johannes Jaeger; Thomas Pradeu; Maria-Carla Saleh
Journal:  PLoS Biol       Date:  2022-06-29       Impact factor: 9.593

7.  MicroRNAs Regulating Autophagy in Neurodegeneration.

Authors:  Qingxuan Lai; Nikolai Kovzel; Ruslan Konovalov; Ilya A Vinnikov
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

8.  Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data.

Authors:  Beverley B Matthews; Gilberto Dos Santos; Madeline A Crosby; David B Emmert; Susan E St Pierre; L Sian Gramates; Pinglei Zhou; Andrew J Schroeder; Kathleen Falls; Victor Strelets; Susan M Russo; William M Gelbart
Journal:  G3 (Bethesda)       Date:  2015-06-24       Impact factor: 3.154

Review 9.  SARS-CoV-2 and its new variants: a comprehensive review on nanotechnological application insights into potential approaches.

Authors:  Ramalingam Karthik Raja; Phuong Nguyen-Tri; Govindasamy Balasubramani; Arun Alagarsamy; Selcuk Hazir; Safa Ladhari; Alireza Saidi; Arivalagan Pugazhendhi; Arulandhu Anthoni Samy
Journal:  Appl Nanosci       Date:  2021-06-10       Impact factor: 3.869

10.  Unannotated small RNA clusters associated with circulating extracellular vesicles detect early stage liver cancer.

Authors:  Johann von Felden; Teresa Garcia-Lezana; Navneet Dogra; Edgar Gonzalez-Kozlova; Mehmet Eren Ahsen; Amanda Craig; Stacey Gifford; Benjamin Wunsch; Joshua T Smith; Sungcheol Kim; Jennifer E L Diaz; Xintong Chen; Ismail Labgaa; Philipp Haber; Reena Olsen; Dan Han; Paula Restrepo; Delia D'Avola; Gabriela Hernandez-Meza; Kimaada Allette; Robert Sebra; Behnam Saberi; Parissa Tabrizian; Amon Asgharpour; Douglas Dieterich; Josep M Llovet; Carlos Cordon-Cardo; Ash Tewari; Myron Schwartz; Gustavo Stolovitzky; Bojan Losic; Augusto Villanueva
Journal:  Gut       Date:  2021-07-28       Impact factor: 31.793

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