Literature DB >> 25100652

Out with the old, in with the new: reassessing morpholino knockdowns in light of genome editing technology.

Stefan Schulte-Merker1, Didier Y R Stainier2.   

Abstract

Morpholino oligomers have been used widely and for many years in the zebrafish community to transiently knock down the function of target genes. It has often been difficult, however, to reliably discriminate between specific and non-specific effects, and thus generally accepted guidelines to control for morpholino side effects do not exist. In light of recent methodologies to generate mutant lines in virtually any zebrafish gene, we discuss these different approaches with a specific focus on how the first description of a loss-of-function phenotype in zebrafish should be accomplished.
© 2014. Published by The Company of Biologists Ltd.

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Year:  2014        PMID: 25100652     DOI: 10.1242/dev.112003

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  71 in total

1.  Homozygous knockout of the piezo1 gene in the zebrafish is not associated with anemia.

Authors:  Boris E Shmukler; Nicholas C Huston; Jonathan N Thon; Chih-Wen Ni; George Kourkoulis; Nathan D Lawson; Barry H Paw; Seth L Alper
Journal:  Haematologica       Date:  2015-08-20       Impact factor: 9.941

2.  ALPK2 Promotes Cardiogenesis in Zebrafish and Human Pluripotent Stem Cells.

Authors:  Peter Hofsteen; Aaron Mark Robitaille; Nicholas Strash; Nathan Palpant; Randall T Moon; Lil Pabon; Charles E Murry
Journal:  iScience       Date:  2018-04-27

3.  Reck enables cerebrovascular development by promoting canonical Wnt signaling.

Authors:  Florian Ulrich; Jorge Carretero-Ortega; Javier Menéndez; Carlos Narvaez; Belinda Sun; Eva Lancaster; Valerie Pershad; Sean Trzaska; Evelyn Véliz; Makoto Kamei; Andrew Prendergast; Kameha R Kidd; Kenna M Shaw; Daniel A Castranova; Van N Pham; Brigid D Lo; Benjamin L Martin; David W Raible; Brant M Weinstein; Jesús Torres-Vázquez
Journal:  Development       Date:  2015-12-10       Impact factor: 6.868

4.  Regulation of transcriptionally active genes via the catalytically inactive Cas9 in C. elegans and D. rerio.

Authors:  Lijiang Long; Hong Guo; Di Yao; Kai Xiong; Yongjun Li; Pengpeng Liu; Zuoyan Zhu; Dong Liu
Journal:  Cell Res       Date:  2015-03-27       Impact factor: 25.617

5.  The Joubert Syndrome Protein Inpp5e Controls Ciliogenesis by Regulating Phosphoinositides at the Apical Membrane.

Authors:  Wenyan Xu; Miaomiao Jin; Ruikun Hu; Hong Wang; Fan Zhang; Shiaulou Yuan; Ying Cao
Journal:  J Am Soc Nephrol       Date:  2016-07-08       Impact factor: 10.121

6.  Homozygous EEF1A2 mutation causes dilated cardiomyopathy, failure to thrive, global developmental delay, epilepsy and early death.

Authors:  Siqi Cao; Laura L Smith; Sergio R Padilla-Lopez; Brandon S Guida; Elizabeth Blume; Jiahai Shi; Sarah U Morton; Catherine A Brownstein; Alan H Beggs; Michael C Kruer; Pankaj B Agrawal
Journal:  Hum Mol Genet       Date:  2017-09-15       Impact factor: 6.150

7.  Autophagy activators suppress cystogenesis in an autosomal dominant polycystic kidney disease model.

Authors:  Ping Zhu; Cynthia J Sieben; Xiaolei Xu; Peter C Harris; Xueying Lin
Journal:  Hum Mol Genet       Date:  2017-01-01       Impact factor: 6.150

Review 8.  Consensus guidelines for the use and interpretation of angiogenesis assays.

Authors:  Patrycja Nowak-Sliwinska; Kari Alitalo; Elizabeth Allen; Andrey Anisimov; Alfred C Aplin; Robert Auerbach; Hellmut G Augustin; David O Bates; Judy R van Beijnum; R Hugh F Bender; Gabriele Bergers; Andreas Bikfalvi; Joyce Bischoff; Barbara C Böck; Peter C Brooks; Federico Bussolino; Bertan Cakir; Peter Carmeliet; Daniel Castranova; Anca M Cimpean; Ondine Cleaver; George Coukos; George E Davis; Michele De Palma; Anna Dimberg; Ruud P M Dings; Valentin Djonov; Andrew C Dudley; Neil P Dufton; Sarah-Maria Fendt; Napoleone Ferrara; Marcus Fruttiger; Dai Fukumura; Bart Ghesquière; Yan Gong; Robert J Griffin; Adrian L Harris; Christopher C W Hughes; Nan W Hultgren; M Luisa Iruela-Arispe; Melita Irving; Rakesh K Jain; Raghu Kalluri; Joanna Kalucka; Robert S Kerbel; Jan Kitajewski; Ingeborg Klaassen; Hynda K Kleinmann; Pieter Koolwijk; Elisabeth Kuczynski; Brenda R Kwak; Koen Marien; Juan M Melero-Martin; Lance L Munn; Roberto F Nicosia; Agnes Noel; Jussi Nurro; Anna-Karin Olsson; Tatiana V Petrova; Kristian Pietras; Roberto Pili; Jeffrey W Pollard; Mark J Post; Paul H A Quax; Gabriel A Rabinovich; Marius Raica; Anna M Randi; Domenico Ribatti; Curzio Ruegg; Reinier O Schlingemann; Stefan Schulte-Merker; Lois E H Smith; Jonathan W Song; Steven A Stacker; Jimmy Stalin; Amber N Stratman; Maureen Van de Velde; Victor W M van Hinsbergh; Peter B Vermeulen; Johannes Waltenberger; Brant M Weinstein; Hong Xin; Bahar Yetkin-Arik; Seppo Yla-Herttuala; Mervin C Yoder; Arjan W Griffioen
Journal:  Angiogenesis       Date:  2018-08       Impact factor: 9.596

9.  A conserved role of αA-crystallin in the development of the zebrafish embryonic lens.

Authors:  Ping Zou; Shu-Yu Wu; Hanane A Koteiche; Sanjay Mishra; Daniel S Levic; Ela Knapik; Wenbiao Chen; Hassane S Mchaourab
Journal:  Exp Eye Res       Date:  2015-07-04       Impact factor: 3.467

Review 10.  Zebrafish models of cardiovascular disease.

Authors:  Despina Bournele; Dimitris Beis
Journal:  Heart Fail Rev       Date:  2016-11       Impact factor: 4.214

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