Literature DB >> 25075263

Two approximations for the geometric model of signal amplification in an electron-multiplying charge-coupled device detector.

Jerry Chao1, Sripad Ram1, E Sally Ward2, Raimund J Ober1.   

Abstract

The extraction of information from images acquired under low light conditions represents a common task in diverse disciplines. In single molecule microscopy, for example, techniques for superresolution image reconstruction depend on the accurate estimation of the locations of individual particles from generally low light images. In order to estimate a quantity of interest with high accuracy, however, an appropriate model for the image data is needed. To this end, we previously introduced a data model for an image that is acquired using the electron-multiplying charge-coupled device (EMCCD) detector, a technology of choice for low light imaging due to its ability to amplify weak signals significantly above its readout noise floor. Specifically, we proposed the use of a geometrically multiplied branching process to model the EMCCD detector's stochastic signal amplification. Geometric multiplication, however, can be computationally expensive and challenging to work with analytically. We therefore describe here two approximations for geometric multiplication that can be used instead. The high gain approximation is appropriate when a high level of signal amplification is used, a scenario which corresponds to the typical usage of an EMCCD detector. It is an accurate approximation that is computationally more efficient, and can be used to perform maximum likelihood estimation on EMCCD image data. In contrast, the Gaussian approximation is applicable at all levels of signal amplification, but is only accurate when the initial signal to be amplified is relatively large. As we demonstrate, it can importantly facilitate the analysis of an information-theoretic quantity called the noise coefficient.

Entities:  

Keywords:  Branching process; electron multiplication; electron-multiplying charge-coupled device; geometric distribution

Year:  2013        PMID: 25075263      PMCID: PMC4112111          DOI: 10.1117/12.2004621

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  6 in total

1.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

2.  Localization accuracy in single-molecule microscopy.

Authors:  Raimund J Ober; Sripad Ram; E Sally Ward
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

3.  Localization accuracy in single molecule microscopy using electron-multiplying charge-coupled device cameras.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-03-15

Review 4.  Do-it-yourself guide: how to use the modern single-molecule toolkit.

Authors:  Nils G Walter; Cheng-Yen Huang; Anthony J Manzo; Mohamed A Sobhy
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

5.  Fisher information matrix for branching processes with application to electron-multiplying charge-coupled devices.

Authors:  Jerry Chao; E Sally Ward; Raimund J Ober
Journal:  Multidimens Syst Signal Process       Date:  2012-09       Impact factor: 2.030

6.  Optimized localization analysis for single-molecule tracking and super-resolution microscopy.

Authors:  Kim I Mortensen; L Stirling Churchman; James A Spudich; Henrik Flyvbjerg
Journal:  Nat Methods       Date:  2010-04-04       Impact factor: 28.547

  6 in total
  3 in total

1.  Performance evaluation of 18 F radioluminescence microscopy using computational simulation.

Authors:  Qian Wang; Debanti Sengupta; Tae Jin Kim; Guillem Pratx
Journal:  Med Phys       Date:  2017-04-17       Impact factor: 4.071

2.  In silico optimization of radioluminescence microscopy.

Authors:  Qian Wang; Debanti Sengupta; Tae Jin Kim; Guillem Pratx
Journal:  J Biophotonics       Date:  2017-11-05       Impact factor: 3.207

3.  Pointwise error estimates in localization microscopy.

Authors:  Martin Lindén; Vladimir Ćurić; Elias Amselem; Johan Elf
Journal:  Nat Commun       Date:  2017-05-03       Impact factor: 14.919

  3 in total

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