Literature DB >> 25067815

Stochastic geometric network models for groups of functional and structural connectomes.

Eric J Friedman1, Adam S Landsberg2, Julia P Owen3, Yi-Ou Li3, Pratik Mukherjee3.   

Abstract

Structural and functional connectomes are emerging as important instruments in the study of normal brain function and in the development of new biomarkers for a variety of brain disorders. In contrast to single-network studies that presently dominate the (non-connectome) network literature, connectome analyses typically examine groups of empirical networks and then compare these against standard (stochastic) network models. The current practice in connectome studies is to employ stochastic network models derived from social science and engineering contexts as the basis for the comparison. However, these are not necessarily best suited for the analysis of connectomes, which often contain groups of very closely related networks, such as occurs with a set of controls or a set of patients with a specific disorder. This paper studies important extensions of standard stochastic models that make them better adapted for analysis of connectomes, and develops new statistical fitting methodologies that account for inter-subject variations. The extensions explicitly incorporate geometric information about a network based on distances and inter/intra hemispherical asymmetries (to supplement ordinary degree-distribution information), and utilize a stochastic choice of network density levels (for fixed threshold networks) to better capture the variance in average connectivity among subjects. The new statistical tools introduced here allow one to compare groups of networks by matching both their average characteristics and the variations among them. A notable finding is that connectomes have high "smallworldness" beyond that arising from geometric and degree considerations alone.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Connectome; Geometric networks; Graph analysis; Network; dMRI; fMRI

Mesh:

Year:  2014        PMID: 25067815      PMCID: PMC4165788          DOI: 10.1016/j.neuroimage.2014.07.039

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  45 in total

1.  The connectional organization of the cortico-thalamic system of the cat.

Authors:  J W Scannell; G A Burns; C C Hilgetag; M A O'Neil; M P Young
Journal:  Cereb Cortex       Date:  1999 Apr-May       Impact factor: 5.357

2.  An exponential random graph modeling approach to creating group-based representative whole-brain connectivity networks.

Authors:  Sean L Simpson; Malaak N Moussa; Paul J Laurienti
Journal:  Neuroimage       Date:  2012-01-17       Impact factor: 6.556

3.  Random graphs with clustering.

Authors:  M E J Newman
Journal:  Phys Rev Lett       Date:  2009-07-27       Impact factor: 9.161

4.  Weight-conserving characterization of complex functional brain networks.

Authors:  Mikail Rubinov; Olaf Sporns
Journal:  Neuroimage       Date:  2011-04-01       Impact factor: 6.556

5.  Random distance dependent attachment as a model for neural network generation in the Caenorhabditis elegans.

Authors:  Royi Itzhack; Yoram Louzoun
Journal:  Bioinformatics       Date:  2010-01-16       Impact factor: 6.937

6.  Test-retest reliability of computational network measurements derived from the structural connectome of the human brain.

Authors:  Julia P Owen; Etay Ziv; Polina Bukshpun; Nicholas Pojman; Mari Wakahiro; Jeffrey I Berman; Timothy P L Roberts; Eric J Friedman; Elliott H Sherr; Pratik Mukherjee
Journal:  Brain Connect       Date:  2013

Review 7.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

8.  Cognitive effort drives workspace configuration of human brain functional networks.

Authors:  Manfred G Kitzbichler; Richard N A Henson; Marie L Smith; Pradeep J Nathan; Edward T Bullmore
Journal:  J Neurosci       Date:  2011-06-01       Impact factor: 6.167

9.  Hierarchical modularity in human brain functional networks.

Authors:  David Meunier; Renaud Lambiotte; Alex Fornito; Karen D Ersche; Edward T Bullmore
Journal:  Front Neuroinform       Date:  2009-10-30       Impact factor: 4.081

10.  Impaired long distance functional connectivity and weighted network architecture in Alzheimer's disease.

Authors:  Yong Liu; Chunshui Yu; Xinqing Zhang; Jieqiong Liu; Yunyun Duan; Aaron F Alexander-Bloch; Bing Liu; Tianzi Jiang; Ed Bullmore
Journal:  Cereb Cortex       Date:  2013-01-11       Impact factor: 5.357

View more
  10 in total

1.  Analysis of brain subnetworks within the context of their whole-brain networks.

Authors:  Mohsen Bahrami; Paul J Laurienti; Sean L Simpson
Journal:  Hum Brain Mapp       Date:  2019-08-22       Impact factor: 5.038

2.  The impacts of pesticide and nicotine exposures on functional brain networks in Latino immigrant workers.

Authors:  Mohsen Bahrami; Paul J Laurienti; Sara A Quandt; Jennifer Talton; Carey N Pope; Phillip Summers; Jonathan H Burdette; Haiying Chen; Jing Liu; Timothy D Howard; Thomas A Arcury; Sean L Simpson
Journal:  Neurotoxicology       Date:  2017-06-02       Impact factor: 4.294

3.  A two-part mixed-effects modeling framework for analyzing whole-brain network data.

Authors:  Sean L Simpson; Paul J Laurienti
Journal:  Neuroimage       Date:  2015-03-19       Impact factor: 6.556

4.  A mixed-modeling framework for whole-brain dynamic network analysis.

Authors:  Mohsen Bahrami; Paul J Laurienti; Heather M Shappell; Dale Dagenbach; Sean L Simpson
Journal:  Netw Neurosci       Date:  2022-06-01

5.  Mixed Modeling Frameworks for Analyzing Whole-Brain Network Data.

Authors:  Sean L Simpson
Journal:  Methods Mol Biol       Date:  2022

6.  Altered default mode network associated with pesticide exposure in Latinx children from rural farmworker families.

Authors:  Mohsen Bahrami; Sean L Simpson; Jonathan H Burdette; Robert G Lyday; Sara A Quandt; Haiying Chen; Thomas A Arcury; Paul J Laurienti
Journal:  Neuroimage       Date:  2022-04-14       Impact factor: 7.400

7.  Directed network motifs in Alzheimer's disease and mild cognitive impairment.

Authors:  Eric J Friedman; Karl Young; Graham Tremper; Jason Liang; Adam S Landsberg; Norbert Schuff
Journal:  PLoS One       Date:  2015-04-16       Impact factor: 3.240

8.  Comparison of Local Information Indices Applied in Resting State Functional Brain Network Connectivity Prediction.

Authors:  Chen Cheng; Junjie Chen; Xiaohua Cao; Hao Guo
Journal:  Front Neurosci       Date:  2016-12-27       Impact factor: 4.677

9.  Functional Brain Networks: Unique Patterns with Hedonic Appetite and Confidence to Resist Eating in Older Adults with Obesity.

Authors:  Jonathan H Burdette; Paul J Laurienti; Laura L Miron; Mohsen Bahrami; Sean L Simpson; Barbara J Nicklas; Jason Fanning; W Jack Rejeski
Journal:  Obesity (Silver Spring)       Date:  2020-11-01       Impact factor: 5.002

10.  Longitudinal relationship of baseline functional brain networks with intentional weight loss in older adults.

Authors:  Jonathan H Burdette; Mohsen Bahrami; Paul J Laurienti; Sean L Simpson; Barbara J Nicklas; Jason Fanning; W Jack Rejeski
Journal:  Obesity (Silver Spring)       Date:  2022-04       Impact factor: 9.298

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.