Literature DB >> 25048260

Total synthesis of a eukaryotic chromosome: Redesigning and SCRaMbLE-ing yeast.

Dejana Jovicevic1, Benjamin A Blount, Tom Ellis.   

Abstract

A team of US researchers recently reported the design, assembly and in vivo functionality of a synthetic chromosome III (SynIII) for the yeast Saccharomyces cerevisiae. The synthetic chromosome was assembled bottom-up from DNA oligomers by teams of students working over several years with researchers as the first part of an international synthetic yeast genome project. Embedded into the sequence of the synthetic chromosome are multiple design changes that include a novel in-built recombination scheme that can be induced to catalyse intra-chromosomal rearrangements in a variety of different conditions. This system, along with the other synthetic sequence changes, is intended to aid researchers develop a deeper understanding of how genomes function and find new ways to exploit yeast in future biotechnologies. The landmark of the first synthesised designer eukaryote chromosome, and the power of its massively parallel recombination system, provide new perspectives on the future of synthetic biology and genome research.
© 2014 WILEY Periodicals, Inc.

Entities:  

Keywords:  DNA assembly; Saccharomyces cerevisiae; genome engineering; synthetic biology; synthetic genomics; yeast

Mesh:

Year:  2014        PMID: 25048260     DOI: 10.1002/bies.201400086

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  11 in total

Review 1.  Bricks and blueprints: methods and standards for DNA assembly.

Authors:  Arturo Casini; Marko Storch; Geoffrey S Baldwin; Tom Ellis
Journal:  Nat Rev Mol Cell Biol       Date:  2015-06-17       Impact factor: 94.444

2.  qPCRTag Analysis--A High Throughput, Real Time PCR Assay for Sc2.0 Genotyping.

Authors:  Leslie A Mitchell; Nick A Phillips; Andrea Lafont; James A Martin; Rupal Cutting; Jef D Boeke
Journal:  J Vis Exp       Date:  2015-05-25       Impact factor: 1.355

Review 3.  Engineered biosynthesis of natural products in heterologous hosts.

Authors:  Yunzi Luo; Bing-Zhi Li; Duo Liu; Lu Zhang; Yan Chen; Bin Jia; Bo-Xuan Zeng; Huimin Zhao; Ying-Jin Yuan
Journal:  Chem Soc Rev       Date:  2015-05-11       Impact factor: 54.564

4.  GC Preps: Fast and Easy Extraction of Stable Yeast Genomic DNA.

Authors:  Benjamin A Blount; Maureen R M Driessen; Tom Ellis
Journal:  Sci Rep       Date:  2016-05-31       Impact factor: 4.379

5.  L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast.

Authors:  Lena Hochrein; Leslie A Mitchell; Karina Schulz; Katrin Messerschmidt; Bernd Mueller-Roeber
Journal:  Nat Commun       Date:  2018-05-22       Impact factor: 14.919

6.  Rapid host strain improvement by in vivo rearrangement of a synthetic yeast chromosome.

Authors:  B A Blount; G-O F Gowers; J C H Ho; R Ledesma-Amaro; D Jovicevic; R M McKiernan; Z X Xie; B Z Li; Y J Yuan; T Ellis
Journal:  Nat Commun       Date:  2018-05-22       Impact factor: 14.919

7.  In vitro DNA SCRaMbLE.

Authors:  Yi Wu; Rui-Ying Zhu; Leslie A Mitchell; Lu Ma; Rui Liu; Meng Zhao; Bin Jia; Hui Xu; Yun-Xiang Li; Zu-Ming Yang; Yuan Ma; Xia Li; Hong Liu; Duo Liu; Wen-Hai Xiao; Xiao Zhou; Bing-Zhi Li; Ying-Jin Yuan; Jef D Boeke
Journal:  Nat Commun       Date:  2018-05-22       Impact factor: 14.919

Review 8.  Emerging Opportunities for Synthetic Biology in Agriculture.

Authors:  Hugh Douglas Goold; Philip Wright; Deborah Hailstones
Journal:  Genes (Basel)       Date:  2018-07-06       Impact factor: 4.096

Review 9.  Selection platforms for directed evolution in synthetic biology.

Authors:  Pedro A G Tizei; Eszter Csibra; Leticia Torres; Vitor B Pinheiro
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

Review 10.  Designing with living systems in the synthetic yeast project.

Authors:  Erika Szymanski; Jane Calvert
Journal:  Nat Commun       Date:  2018-07-27       Impact factor: 14.919

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