Literature DB >> 25044570

Visual displays that directly interface and provide read-outs of molecular states via molecular graphics processing units.

Julia E Poje1, Tamara Kastratovic, Andrew R Macdonald, Ana C Guillermo, Steven E Troetti, Omar J Jabado, M Leigh Fanning, Darko Stefanovic, Joanne Macdonald.   

Abstract

The monitoring of molecular systems usually requires sophisticated technologies to interpret nanoscale events into electronic-decipherable signals. We demonstrate a new method for obtaining read-outs of molecular states that uses graphics processing units made from molecular circuits. Because they are made from molecules, the units are able to directly interact with molecular systems. We developed deoxyribozyme-based graphics processing units able to monitor nucleic acids and output alphanumerical read-outs via a fluorescent display. Using this design we created a molecular 7-segment display, a molecular calculator able to add and multiply small numbers, and a molecular automaton able to diagnose Ebola and Marburg virus sequences. These molecular graphics processing units provide insight for the construction of autonomous biosensing devices, and are essential components for the development of molecular computing platforms devoid of electronics.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA computing; biosensors; molecular automata; molecular devices; nanotechnology

Mesh:

Substances:

Year:  2014        PMID: 25044570     DOI: 10.1002/anie.201402698

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  14 in total

1.  Liquid-to-gel transition for visual and tactile detection of biological analytes.

Authors:  Tatiana A Fedotova; Dmitry M Kolpashchikov
Journal:  Chem Commun (Camb)       Date:  2017-11-23       Impact factor: 6.222

2.  Alphanumerical Visual Display Made of DNA Logic Gates for Drug Susceptibility Testing of Pathogens.

Authors:  Ryan P Connelly; Evgeny S Morozkin; Yulia V Gerasimova
Journal:  Chembiochem       Date:  2018-01-04       Impact factor: 3.164

3.  Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems.

Authors:  Shay Mailloux; Yulia V Gerasimova; Nataliia Guz; Dmitry M Kolpashchikov; Evgeny Katz
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-09       Impact factor: 15.336

4.  Divide and control: split design of multi-input DNA logic gates.

Authors:  Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chem Commun (Camb)       Date:  2014-11-27       Impact factor: 6.222

5.  A mutation-resistant deoxyribozyme OR gate for highly selective detection of viral nucleic acids.

Authors:  Ola Kamar; Sin-Cih Sun; Chieh-Hua Lin; Wan-Yu Chung; Min-Shi Lee; Yu-Chieh Liao; Dmitry M Kolpashchikov; Min-Chieh Chuang
Journal:  Chem Commun (Camb)       Date:  2017-09-21       Impact factor: 6.222

6.  DNA Computing Systems Activated by Electrochemically-triggered DNA Release from a Polymer-brush-modified Electrode Array.

Authors:  Maria Gamella; Andrey Zakharchenko; Nataliia Guz; Madeline Masi; Sergiy Minko; Dmitry M Kolpashchikov; Heiko Iken; Arshak Poghossian; Michael J Schöning; Evgeny Katz
Journal:  Electroanalysis       Date:  2016-08-05       Impact factor: 3.223

7.  An analysis of simple computational strategies to facilitate the design of functional molecular information processors.

Authors:  Yiling Lee; Rozieffa Roslan; Shariza Azizan; Mohd Firdaus-Raih; Effirul I Ramlan
Journal:  BMC Bioinformatics       Date:  2016-10-28       Impact factor: 3.169

8.  Multicomponent reactions provide key molecules for secret communication.

Authors:  Andreas C Boukis; Kevin Reiter; Maximiliane Frölich; Dennis Hofheinz; Michael A R Meier
Journal:  Nat Commun       Date:  2018-04-12       Impact factor: 14.919

9.  Message in a molecule.

Authors:  Tanmay Sarkar; Karuthapandi Selvakumar; Leila Motiei; David Margulies
Journal:  Nat Commun       Date:  2016-05-03       Impact factor: 14.919

10.  A DNA-based system for selecting and displaying the combined result of two input variables.

Authors:  Huajie Liu; Jianbang Wang; Shiping Song; Chunhai Fan; Kurt V Gothelf
Journal:  Nat Commun       Date:  2015-12-08       Impact factor: 14.919

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