Literature DB >> 25041737

Recent applications of synthetic biology tools for yeast metabolic engineering.

Michael K Jensen1, Jay D Keasling2,3,4,5.   

Abstract

The last 20 years of metabolic engineering has enabled bio-based production of fuels and chemicals from renewable carbon sources using cost-effective bioprocesses. Much of this work has been accomplished using engineered microorganisms that act as chemical factories. Although the time required to engineer microbial chemical factories has steadily decreased, improvement is still needed. Through the development of synthetic biology tools for key microbial hosts, it should be possible to further decrease the development times and improve the reliability of the resulting microorganism. Together with continuous decreases in price and improvements in DNA synthesis, assembly and sequencing, synthetic biology tools will rationalize time-consuming strain engineering, improve control of metabolic fluxes, and diversify screening assays for cellular metabolism. This review outlines some recently developed synthetic biology tools and their application to improve production of chemicals and fuels in yeast. Finally, we provide a perspective for the challenges that lie ahead. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permission@oup.com.

Entities:  

Keywords:  chemicals; production; synthetic biology

Mesh:

Substances:

Year:  2015        PMID: 25041737     DOI: 10.1111/1567-1364.12185

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  29 in total

1.  A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast.

Authors:  Anja Hofmann; Johannes Falk; Tim Prangemeier; Dominic Happel; Adrian Köber; Andreas Christmann; Heinz Koeppl; Harald Kolmar
Journal:  Nucleic Acids Res       Date:  2019-01-10       Impact factor: 16.971

2.  Improvement of glucose uptake rate and production of target chemicals by overexpressing hexose transporters and transcriptional activator Gcr1 in Saccharomyces cerevisiae.

Authors:  Daehee Kim; Ji-Yoon Song; Ji-Sook Hahn
Journal:  Appl Environ Microbiol       Date:  2015-10-02       Impact factor: 4.792

3.  High throughput gene expression profiling of yeast colonies with microgel-culture Drop-seq.

Authors:  Leqian Liu; Chiraj K Dalal; Benjamin M Heineike; Adam R Abate
Journal:  Lab Chip       Date:  2019-05-14       Impact factor: 6.799

4.  Controlling heterologous gene expression in yeast cell factories on different carbon substrates and across the diauxic shift: a comparison of yeast promoter activities.

Authors:  Bingyin Peng; Thomas C Williams; Matthew Henry; Lars K Nielsen; Claudia E Vickers
Journal:  Microb Cell Fact       Date:  2015-06-26       Impact factor: 5.328

5.  Model-Based Investigation of the Relationship between Regulation Level and Pulse Property of I1-FFL Gene Circuits.

Authors:  Jordan Ryan; Seongho Hong; Mathias Foo; Jongmin Kim; Xun Tang
Journal:  ACS Synth Biol       Date:  2022-06-21       Impact factor: 5.249

6.  Combinatorial metabolic pathway assembly in the yeast genome with RNA-guided Cas9.

Authors:  Steve F EauClaire; Jianzhong Zhang; Corban Gregory Rivera; Lixuan L Huang
Journal:  J Ind Microbiol Biotechnol       Date:  2016-05-02       Impact factor: 3.346

7.  Parts-Prospecting for a High-Efficiency Thiamin Thiazole Biosynthesis Pathway.

Authors:  Jiayi Sun; Cindy L Sigler; Guillaume A W Beaudoin; Jaya Joshi; Jenelle A Patterson; Keun H Cho; Maria A Ralat; Jesse F Gregory; David G Clark; Zhanao Deng; Thomas A Colquhoun; Andrew D Hanson
Journal:  Plant Physiol       Date:  2018-10-18       Impact factor: 8.340

Review 8.  Discovery and resupply of pharmacologically active plant-derived natural products: A review.

Authors:  Atanas G Atanasov; Birgit Waltenberger; Eva-Maria Pferschy-Wenzig; Thomas Linder; Christoph Wawrosch; Pavel Uhrin; Veronika Temml; Limei Wang; Stefan Schwaiger; Elke H Heiss; Judith M Rollinger; Daniela Schuster; Johannes M Breuss; Valery Bochkov; Marko D Mihovilovic; Brigitte Kopp; Rudolf Bauer; Verena M Dirsch; Hermann Stuppner
Journal:  Biotechnol Adv       Date:  2015-08-15       Impact factor: 14.227

9.  Artificial cell-cell communication as an emerging tool in synthetic biology applications.

Authors:  Stefan Hennig; Gerhard Rödel; Kai Ostermann
Journal:  J Biol Eng       Date:  2015-08-12       Impact factor: 4.355

10.  Adaptive mutations in sugar metabolism restore growth on glucose in a pyruvate decarboxylase negative yeast strain.

Authors:  Yiming Zhang; Guodong Liu; Martin K M Engqvist; Anastasia Krivoruchko; Björn M Hallström; Yun Chen; Verena Siewers; Jens Nielsen
Journal:  Microb Cell Fact       Date:  2015-08-08       Impact factor: 5.328

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