Literature DB >> 30476163

A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast.

Anja Hofmann1, Johannes Falk2, Tim Prangemeier3, Dominic Happel1, Adrian Köber1, Andreas Christmann1, Heinz Koeppl3, Harald Kolmar1.   

Abstract

The robust and precise on and off switching of one or more genes of interest, followed by expression or repression is essential for many biological circuits as well as for industrial applications. However, many regulated systems published to date influence the viability of the host cell, show high basal expression or enable only the overexpression of the target gene without the possibility of fine regulation. Herein, we describe an AND gate designed to overcome these limitations by combining the advantages of three well established systems, namely the scaffold RNA CRISPR/dCas9 platform that is controlled by Gal10 as a natural and by LexA-ER-AD as heterologous transcription factor. We hence developed a predictable and modular, versatile expression control system. The selection of a reporter gene set up combining a gene of interest (GOI) with a fluorophore by the ribosomal skipping T2A sequence allows to adapt the system to any gene of interest without losing reporter function. In order to obtain a better understanding of the underlying principles and the functioning of our system, we backed our experimental findings with the development of a mathematical model and single-cell analysis.

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Year:  2019        PMID: 30476163      PMCID: PMC6326796          DOI: 10.1093/nar/gky1191

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  58 in total

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Authors:  Allison Hoynes-O'Connor; Tae Seok Moon
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5.  Noise-induced multistability in chemical systems: Discrete versus continuum modeling.

Authors:  Andrew Duncan; Shuohao Liao; Tomáš Vejchodský; Radek Erban; Ramon Grima
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-04-10

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Journal:  Gene       Date:  1989-11-15       Impact factor: 3.688

8.  Fast-acting and nearly gratuitous induction of gene expression and protein depletion in Saccharomyces cerevisiae.

Authors:  R Scott McIsaac; Sanford J Silverman; Megan N McClean; Patrick A Gibney; Joanna Macinskas; Mark J Hickman; Allegra A Petti; David Botstein
Journal:  Mol Biol Cell       Date:  2011-09-30       Impact factor: 4.138

9.  2A peptides provide distinct solutions to driving stop-carry on translational recoding.

Authors:  Pamila Sharma; Fu Yan; Victoria A Doronina; Helena Escuin-Ordinas; Martin D Ryan; Jeremy D Brown
Journal:  Nucleic Acids Res       Date:  2011-12-02       Impact factor: 16.971

10.  CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.

Authors:  Prashant Mali; John Aach; P Benjamin Stranges; Kevin M Esvelt; Mark Moosburner; Sriram Kosuri; Luhan Yang; George M Church
Journal:  Nat Biotechnol       Date:  2013-08-01       Impact factor: 54.908

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  2 in total

1.  A Tunable and Expandable Transactivation System in Probiotic Yeast Saccharomyces boulardii.

Authors:  Suryang Kwak; Bejan Mahmud; Gautam Dantas
Journal:  ACS Synth Biol       Date:  2021-12-23       Impact factor: 5.249

2.  CRISPR interference-based gene repression in the plant growth promoter Paenibacillus sonchi genomovar Riograndensis SBR5.

Authors:  Luciana F Brito; Kerstin Schultenkämper; Luciane M P Passaglia; Volker F Wendisch
Journal:  Appl Microbiol Biotechnol       Date:  2020-04-09       Impact factor: 4.813

  2 in total

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