| Literature DB >> 25027354 |
Liu Huang1, Fengju Chen2, Yangyang Chen2, Xiaomei Yang2, Sanpeng Xu3, Shuwang Ge4, Shengling Fu5, Tengfei Chao1, Qianqian Yu1, Xin Liao1, Guangyuan Hu1, Peng Zhang1, Xianglin Yuan1.
Abstract
The predictive value of thymidine phosphorylase gene variants (TP, also called platelet-derived endothelial cell growth factor) and thrombocytosis were controversial and worthy of further study in gastrointestinal cancer (GIC) patients. We screened all of the common missense single nucleotide polymorphisms (MAF ≥ 0.1) in fluoropyrimidines (FU) pathway genes (including TP, TS, ENOSF1 and DPD). Three of them were selected and genotyped using Sequenom MassARRAY in 141 GIC patients. TP expression was assessed by immunohistochemistry. Our aim was to evaluate the prognostic significance of studied genes and platelet counts in GIC patients. Multivariate analyses indicated in rs11479-T allele carriers, platelet counts negatively correlated to overall survival. In addition, T allele of TP: rs11479 was associated with higher TP expression in cancer tissues. We suggest TP: rs11479 variant combined with platelet counts may be useful prognostic makers in GIC patients receiving first-line FU chemotherapy and thrombopoietin factor should be used with caution in the rs11479 T allele bearing patients.Entities:
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Year: 2014 PMID: 25027354 PMCID: PMC4100023 DOI: 10.1038/srep05697
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Patient and disease characteristics
| Characteristic | No. of Patients (%) |
|---|---|
| <60 years | 105(74.5) |
| ≥60 years | 36(25.5) |
| Median (range) | 53(18–79) |
| Male | 89(63.1) |
| Female | 52(36.9) |
| 60% | 16(11.3) |
| 70% | 52(36.9) |
| ≥80% | 73(51.8) |
| never | 94(66.7) |
| ever | 47(33.3) |
| Fu + irinotecan | 72(51.1) |
| Fu + platinum | 65(46.1) |
| Capecitabine | 4(2.8) |
| Colon | 63(44.7) |
| Rectum | 46(32.6) |
| Gastric | 32(22.7) |
KPS, Karnofsky's index of performance status; FU, fluoropyrimidines.
SNPs information and genotypic frequencies
| Genotype frequency, n(%) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| SNPs | Gene | Allelic change | AA change | Call rate, | HWE, ( | MAF | wt/wt | wt/var | var/var |
| DPYD | A > G | I543V | 140(99.3) | 0.832 | 0.261 | 77(55.0) | 53(37.9) | 10(7.1) | |
| TYMP | C > T | S471L | 141(100.0) | 0.991 | 0.188 | 93(66.0) | 43(30.5) | 5(3.5) | |
| ENOSF1 | T > C | M145T | 141(100.0) | 0.157 | 0.124 | 110(78.0) | 27(19.1) | 4(2.8) | |
SNPs, Single-nucleotide polymorphisms; AA, amino acid; N, No. of Patients; HWE, Hardy-Weinberg equilibrium; MAF, minor allele frequency; wt, wild type; var, variant.
Univariate and multivariate analysis (logistic regression) of ORR
| Variate | Univariate | Multivariate | ||||
|---|---|---|---|---|---|---|
| OR(95%CI) | OR(95%CI) | |||||
| 131 | 1.412(0.606–3.290) | 0.424 | 125 | 1.659(0.656–4.194) | 0.285 | |
| 131 | 0.801(0.376–1.708) | 0.566 | 125 | 0.723(0.225–2.322) | 0.586 | |
| 131 | 0.991(0.947–1.036) | 0.683 | 125 | 0.962(0.910–1.016) | 0.159 | |
| 131 | 2.316(0.232–23.154) | 0.474 | 125 | 4.517(0.147–138.580) | 0.388 | |
| 131 | 0.802(0.372–1.732) | 0.574 | 125 | 0.673(0.263–1.725) | 0.410 | |
| 126 | 1.296(0.486–3.457) | 0.604 | 125 | 1.117(0.383–3.255) | 0.839 | |
| 126 | 0.685(0.307–1.530) | 0.357 | 125 | 0.555(0.224–1.379) | 0.205 | |
| 126 | 0.929(0.429–2.014) | 0.853 | 125 | 1.056(0.427–2.609) | 0.906 | |
| 131 | 1.039(0.483–2.239) | 0.921 | 125 | 0.965(0.413–2.255) | 0.935 | |
| 130 | 0.989(0.478–2.047) | 0.977 | 125 | 1.049(0.490–2.246) | 0.903 | |
| 131 | 1.257(0.531–2.974) | 0.602 | 125 | 1.230(0.509–2.973) | 0.646 | |
ORR, objective response rate; N, No. of assessable patients; OR, odds ratio; CI, confidence interval; SA, surface area; PS, performance status; SS, smoking status.
Figure 1(A; B; C; D): OS in patients according to Age, Thrombocytopenia, Thrombocytosis, and Smoke status; (E; F; G; H): Prognostic value of platelet counts in patients with different rs11479 genotypes (log-rank test).
Multivariate Cox regressionanalysis (Enter) of PFS, TTF and OS
| Variate | PFS ( | TTF( | OS( | |||
|---|---|---|---|---|---|---|
| HR(95%CI) | HR(95%CI) | HR(95%CI) | ||||
| 0.543(0.254–1.163) | 0.116 | 0.706(0.367–1.359) | 0.298 | 0.448(0.236–0.853) | ||
| 1.187(0.523–2.692) | 0.682 | 1.165(0.568–2.389) | 0.677 | 0.680(0.325–1.420) | 0.304 | |
| 1.010(0.968–1.053) | 0.652 | 1.007(0.970–1.047) | 0.707 | 0.984(0.953–1.016) | 0.330 | |
| 0.812(0.062–10.604) | 0.874 | 0.664(0.064–6.942) | 0.733 | 0.275(0.034–2.252) | 0.229 | |
| 1.614(0.743–3.509) | 0.227 | 1.472(0.734–2.952) | 0.276 | 1.754(1.000–3.078) | ||
| 1.231(0.592–2.561) | 0.578 | 1.117(0.584–2.137) | 0.738 | 0.436(0.209–0.911) | ||
| 1.043(0.563–1.931) | 0.893 | 1.017(0.572–1.807) | 0.955 | 1.407(0.838–2.362) | 0.197 | |
| 1.324(0.728–2.408) | 0.358 | 1.230(0.701–2.158) | 0.470 | 1.174(0.677–2.034) | 0.568 | |
| 0.536(0.284–1.011) | 0.054 | 0.557(0.308–1.005) | 0.052 | 0.611(0.363–1.030) | 0.064 | |
| 0.733(0.406–1.321) | 0.301 | 0.836(0.485–1.441) | 0.519 | 0.667(0.422–1.055) | 0.083 | |
| 1.134(0.652–1.974) | 0.655 | 1.109(0.659–1.865) | 0.698 | 1.239(0.729–2.106) | 0.428 |
PFS, progression-free survival; TTF, time to treatment failure; OS, overall survival; N, No. of assessable patients; HR, hazard ratio; CI, confidence interval; SA, surface area; PS, performance status; SS, smoking status.
Figure 2Immunohistochemical staining for thymidine phosphorylase (TP)in cancer tissues (original magnification × 100).
TP = 0, Stromal cells TP-positive but TP-negative tumor cells (a);TP = 1, more than 5% but less than 50% of the cancer cells were TP-positive (b); TP = 2, more than 50% of the cancer cells were TP-positive (c).