Literature DB >> 32419578

Target-Directed Approaches for Screening Small Molecules against RNA Targets.

Hafeez S Haniff1, Laurent Knerr2, Jonathan L Chen1, Matthew D Disney1, Helen L Lightfoot3.   

Abstract

RNA molecules have a variety of cellular functions that can drive disease pathologies. They are without a doubt one of the most intriguing yet controversial small-molecule drug targets. The ability to widely target RNA with small molecules could be revolutionary, once the right tools, assays, and targets are selected, thereby defining which biomolecules are targetable and what constitutes drug-like small molecules. Indeed, approaches developed over the past 5-10 years have changed the face of small molecule-RNA targeting by addressing historic concerns regarding affinity, selectivity, and structural dynamics. Presently, selective RNA-protein complex stabilizing drugs such as branaplam and risdiplam are in clinical trials for the modulation of SMN2 splicing, compounds identified from phenotypic screens with serendipitous outcomes. Fully developing RNA as a druggable target will require a target engagement-driven approach, and evolving chemical collections will be important for the industrial development of this class of target. In this review we discuss target-directed approaches that can be used to identify RNA-binding compounds and the chemical knowledge we have today of small-molecule RNA binders.

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Year:  2020        PMID: 32419578      PMCID: PMC7442623          DOI: 10.1177/2472555220922802

Source DB:  PubMed          Journal:  SLAS Discov        ISSN: 2472-5552            Impact factor:   3.341


  207 in total

1.  A high-throughput screening utilizing intramolecular fluorescence resonance energy transfer for the discovery of the molecules that bind HIV-1 TAR RNA specifically.

Authors:  C Matsumoto; K Hamasaki; H Mihara; A Ueno
Journal:  Bioorg Med Chem Lett       Date:  2000-08-21       Impact factor: 2.823

2.  DrugScoreRNA--knowledge-based scoring function to predict RNA-ligand interactions.

Authors:  Patrick Pfeffer; Holger Gohlke
Journal:  J Chem Inf Model       Date:  2007-08-18       Impact factor: 4.956

3.  RNA recognition by Tat-derived peptides: interaction in the major groove?

Authors:  K M Weeks; D M Crothers
Journal:  Cell       Date:  1991-08-09       Impact factor: 41.582

Review 4.  Targeting RNA with small molecules.

Authors:  Jason R Thomas; Paul J Hergenrother
Journal:  Chem Rev       Date:  2008-03-25       Impact factor: 60.622

5.  Targeting RNA with Small Molecules To Capture Opportunities at the Intersection of Chemistry, Biology, and Medicine.

Authors:  Matthew D Disney
Journal:  J Am Chem Soc       Date:  2019-04-19       Impact factor: 15.419

6.  Fluorescent peptide displacement as a general assay for screening small molecule libraries against RNA.

Authors:  Neeraj N Patwardhan; Zhengguo Cai; Colby N Newson; Amanda E Hargrove
Journal:  Org Biomol Chem       Date:  2019-02-13       Impact factor: 3.876

Review 7.  Expanding the number of 'druggable' targets: non-enzymes and protein-protein interactions.

Authors:  Leah N Makley; Jason E Gestwicki
Journal:  Chem Biol Drug Des       Date:  2013-01       Impact factor: 2.817

Review 8.  Antisense oligonucleotides: the next frontier for treatment of neurological disorders.

Authors:  Carlo Rinaldi; Matthew J A Wood
Journal:  Nat Rev Neurol       Date:  2017-12-01       Impact factor: 42.937

Review 9.  Unveiling the druggable RNA targets and small molecule therapeutics.

Authors:  Joanna Sztuba-Solinska; Gabriela Chavez-Calvillo; Sabrina Elizabeth Cline
Journal:  Bioorg Med Chem       Date:  2019-03-30       Impact factor: 3.641

10.  Expansion of cat-ELCCA for the Discovery of Small Molecule Inhibitors of the Pre-let-7-Lin28 RNA-Protein Interaction.

Authors:  Daniel A Lorenz; Tanpreet Kaur; Samuel A Kerk; Erin E Gallagher; Jorge Sandoval; Amanda L Garner
Journal:  ACS Med Chem Lett       Date:  2018-05-16       Impact factor: 4.345

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  3 in total

1.  Massively Parallel Optimization of the Linker Domain in Small Molecule Dimers Targeting a Toxic r(CUG) Repeat Expansion.

Authors:  Simon Vezina-Dawod; Alicia J Angelbello; Shruti Choudhary; Kye Won Wang; Ilyas Yildirim; Matthew D Disney
Journal:  ACS Med Chem Lett       Date:  2021-03-02       Impact factor: 4.632

Review 2.  Drug Screening and Drug Repositioning as Promising Therapeutic Approaches for Spinal Muscular Atrophy Treatment.

Authors:  Giovanna Menduti; Daniela Maria Rasà; Serena Stanga; Marina Boido
Journal:  Front Pharmacol       Date:  2020-11-12       Impact factor: 5.810

3.  In Vitro Evaluation of Bis-3-Chloropiperidines as RNA Modulators Targeting TAR and TAR-Protein Interaction.

Authors:  Alice Sosic; Giulia Olivato; Caterina Carraro; Richard Göttlich; Dan Fabris; Barbara Gatto
Journal:  Int J Mol Sci       Date:  2022-01-06       Impact factor: 5.923

  3 in total

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