Literature DB >> 24998309

Fourier transform infrared difference and time-resolved infrared detection of the electron and proton transfer dynamics in photosynthetic water oxidation.

Takumi Noguchi1.   

Abstract

Photosynthetic water oxidation, which provides the electrons necessary for CO₂ reduction and releases O₂ and protons, is performed at the Mn₄CaO₅ cluster in photosystem II (PSII). In this review, studies that assessed the mechanism of water oxidation using infrared spectroscopy are summarized focusing on electron and proton transfer dynamics. Structural changes in proteins and water molecules between intermediates known as Si states (i=0-3) were detected using flash-induced Fourier transform infrared (FTIR) difference spectroscopy. Electron flow in PSII and proton release from substrate water were monitored using the infrared changes in ferricyanide as an exogenous electron acceptor and Mes buffer as a proton acceptor. Time-resolved infrared (TRIR) spectroscopy provided information on the dynamics of proton-coupled electron transfer during the S-state transitions. In particular, a drastic proton movement during the lag phase (~200μs) before electron transfer in the S3→S0 transition was detected directly by monitoring the infrared absorption of a polarizable proton in a hydrogen bond network. Furthermore, the proton release pathways in the PSII proteins were analyzed by FTIR difference measurements in combination with site-directed mutagenesis, isotopic substitutions, and quantum chemical calculations. Therefore, infrared spectroscopy is a powerful tool for understanding the molecular mechanism of photosynthetic water oxidation. This article is part of a Special Issue entitled: Vibrational spectroscopies and bioenergetic systems.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  FTIR; Oxygen evolution; Photosynthesis; Proton transfer; Time-resolved infrared spectroscopy; Water oxidation

Mesh:

Substances:

Year:  2014        PMID: 24998309     DOI: 10.1016/j.bbabio.2014.06.009

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  20 in total

1.  Redox potential of the terminal quinone electron acceptor QB in photosystem II reveals the mechanism of electron transfer regulation.

Authors:  Yuki Kato; Ryo Nagao; Takumi Noguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-29       Impact factor: 11.205

2.  Modeling of the redox state dynamics in photosystem II of Chlorella pyrenoidosa Chick cells and leaves of spinach and Arabidopsis thaliana from single flash-induced fluorescence quantum yield changes on the 100 ns-10 s time scale.

Authors:  N E Belyaeva; F-J Schmitt; V Z Paschenko; G Yu Riznichenko; A B Rubin
Journal:  Photosynth Res       Date:  2015-06-07       Impact factor: 3.573

3.  Identifying carboxylate ligand vibrational modes in photosystem II with QM/MM methods.

Authors:  Richard J Debus
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-28       Impact factor: 11.205

4.  Modified molecular interactions of the pheophytin and plastoquinone electron acceptors in photosystem II of chlorophyll D-containing Acaryochloris marina as revealed by FTIR spectroscopy.

Authors:  Yuko Sano; Kaichiro Endo; Tatsuya Tomo; Takumi Noguchi
Journal:  Photosynth Res       Date:  2015-01-06       Impact factor: 3.573

5.  Thermodynamics of Proton and Electron Transfer in Tetranuclear Clusters with Mn-OH2/OH Motifs Relevant to H2O Activation by the Oxygen Evolving Complex in Photosystem II.

Authors:  Christopher J Reed; Theodor Agapie
Journal:  J Am Chem Soc       Date:  2018-08-16       Impact factor: 15.419

Review 6.  Time-resolved infrared spectroscopy in the study of photosynthetic systems.

Authors:  Alberto Mezzetti; Winfried Leibl
Journal:  Photosynth Res       Date:  2016-09-27       Impact factor: 3.573

7.  D1-Asn-298 in photosystem II is involved in a hydrogen-bond network near the redox-active tyrosine YZ for proton exit during water oxidation.

Authors:  Ryo Nagao; Hanayo Ueoka-Nakanishi; Takumi Noguchi
Journal:  J Biol Chem       Date:  2017-10-18       Impact factor: 5.157

8.  Structural isomers of the S2 state in photosystem II: do they exist at room temperature and are they important for function?

Authors:  Ruchira Chatterjee; Louise Lassalle; Sheraz Gul; Franklin D Fuller; Iris D Young; Mohamed Ibrahim; Casper de Lichtenberg; Mun Hon Cheah; Athina Zouni; Johannes Messinger; Vittal K Yachandra; Jan Kern; Junko Yano
Journal:  Physiol Plant       Date:  2019-03-15       Impact factor: 4.500

9.  Quantum mechanics/molecular mechanics simulation of the ligand vibrations of the water-oxidizing Mn4CaO5 cluster in photosystem II.

Authors:  Shin Nakamura; Takumi Noguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

10.  Optimizing Crystal Size of Photosystem II by Macroseeding: Toward Neutron Protein Crystallography.

Authors:  Rana Hussein; Mohamed Ibrahim; Ruchira Chatterjee; Leighton Coates; Frank Müh; Vittal K Yachandra; Junko Yano; Jan Kern; Holger Dobbek; Athina Zouni
Journal:  Cryst Growth Des       Date:  2017-11-13       Impact factor: 4.076

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