| Literature DB >> 24995921 |
Maximiliano Martínez-Cifuentes1, Boris E Weiss-López2, Leonardo S Santos1, Ramiro Araya-Maturana3.
Abstract
Intramolecular hydrogen bonds (IHBs) play a central role in the molecular structure, chemical reactivity and interactions of biologically active molecules. Here, we study the IHBs of seven related o-carbonyl hydroquinones and one structurally-related aromatic lactone, some of which have shown anticancer and antioxidant activity. Experimental NMR data were correlated with theoretical calculations at the DFT and ab initio levels. Natural bond orbital (NBO) and molecular electrostatic potential (MEP) calculations were used to study the electronic characteristics of these IHB. As expected, our results show that NBO calculations are better than MEP to describe the strength of the IHBs. NBO energies (∆Eij(2)) show that the main contributions to energy stabilization correspond to LP-->σ* interactions for IHBs, O1…O2-H2 and the delocalization LP-->π* for O2-C2=Cα(β). For the O1…O2-H2 interaction, the values of ∆Eij(2) can be attributed to the difference in the overlap ability between orbitals i and j (Fij), instead of the energy difference between them. The large energy for the LP O2-->π* C2=Cα(β) interaction in the compounds 9-Hydroxy-5-oxo-4,8, 8-trimethyl-l,9(8H)-anthracenecarbolactone (VIII) and 9,10-dihydroxy-4,4-dimethylanthracen-1(4H)-one (VII) (55.49 and 60.70 kcal/mol, respectively) when compared with the remaining molecules (all less than 50 kcal/mol), suggests that the IHBs in VIII and VII are strongly resonance assisted.Entities:
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Year: 2014 PMID: 24995921 PMCID: PMC6270916 DOI: 10.3390/molecules19079354
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Structure of compounds studied in this work.
1H-NMR chemical shifts for H2 and geometrical parameters for hydrogen bonds calculated at B3LYP/6-31++G(d,p) and MP2/6-31++G(d,p) level of theory. The numbering of compounds is according to Figure 1.
| Molecule | δH2 | B3LYP/6-31++G(d,p) | MP2/6-31++G(d,p) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| O1…O2 | O2-H2 | O1…H2 | < O2-H2…O1 | O1…O2 | O2-H2 | O1…H2 | < O2-H2…O1 | ||
| 12.54 | 2.540 | 0.996 | 1.638 | 148 | 2.573 | 0.989 | 1.682 | 148 | |
| 12.32 | 2.556 | 0.994 | 1.657 | 148 | 2.592 | 0.988 | 1.703 | 148 | |
| 13.08 | 2.533 | 0.998 | 1.624 | 149 | 2.567 | 0.991 | 1.667 | 149 | |
| 12.70 | 2.538 | 0.996 | 1.634 | 149 | 2.571 | 0.990 | 1.679 | 148 | |
| 12.95 | 2.525 | 0.997 | 1.617 | 149 | 2.570 | 0.989 | 1.676 | 148 | |
| 12.94 | 2.521 | 0.997 | 1.613 | 149 | 2.521 | 0.997 | 1.613 | 149 | |
| 14.53 | 2.505 | 1.005 | 1.584 | 150 | 2.543 | 0.995 | 1.637 | 149 | |
| 15.60 | 2.482 | 1.014 | 1.544 | 152 | 2.526 | 0.999 | 1.608 | 150 | |
| R2 | 0.89 | 0.98 | 0.94 | 0.92 | 0.39 | 0.84 | 0.50 | 0.59 | |
Distances in Å, Angle in °, δ in ppm. R2 corresponds to correlation between NMR δH2 and geometrical parameters.
Figure 2Molecular electrostatic potential (0.004 a.u.) of I, II, VII and VIII.
MEP values (B3LYP/6-31+G**//B3LYP/6-31++G**), Vmin and Vα(r) (kcal/mol).
| Molecule | Vα(r) | Vmin(O1) |
|---|---|---|
| 165.0 | −48.9 | |
| 169.2 | −45.0 | |
| 163.2 | −50.5 | |
| 161.7 | −51.3 | |
| 165.7 | −48.2 | |
| 164.1 | −49.2 | |
| 166.2 | −49.5 | |
| 174.9 | −43.6 |
Natural charges (NC) and Wiberg bond order (WBO) at HF/6-311G** //B3LYP/6-31++G** level for selected atoms in HQs.
| Molecule | NC O1 | NC O2 | NC H2 | WBO O2-H2 | WBO H2…O1 |
|---|---|---|---|---|---|
| −0.721 | −0.753 | 0.522 | 0.6470 | 0.0699 | |
| −0.717 | −0.759 | 0.524 | 0.6501 | 0.0647 | |
| −0.726 | −0.765 | 0.525 | 0.6395 | 0.0747 | |
| −0.727 | −0.760 | 0.522 | 0.6460 | 0.0712 | |
| −0.725 | −0.763 | 0.524 | 0.6393 | 0.0751 | |
| −0.726 | −0.765 | 0.523 | 0.6402 | 0.0757 | |
| −0.734 | −0.760 | 0.530 | 0.6197 | 0.0890 | |
| −0.736 | −0.755 | 0.532 | 0.6004 | 0.1051 |
Stabilization energies (kcal/mol) for selected NBO pairs (donor-acceptor) given by second order perturbation energies of the Fock matrix in the NBO basis for the HQs (HF/6-311G**//B3LYP/6-31++G**).
| Molecule | Φi | Φj | ∆Eij (2) | εj–εi/au | Fij/au | Φi | Φj | ∆Eij (2) | εj−εi/au | Fij/au |
|---|---|---|---|---|---|---|---|---|---|---|
| LP1 O1 | σ* O2-H2 | 4.04 | 1.58 | 0.072 | LP1 O2 | σ* C2-Cα | 10.15 | 1.60 | 0.114 | |
| LP2 O1 | σ* O2-H2 | 28.33 | 1.18 | 0.165 | LP2 O2 | π* C2-Cα | 48.43 | 0.63 | 0.168 | |
| LP1 O1 | σ* O2-H2 | 3.67 | 1.58 | 0.068 | LP1 O2 | σ* C2-Cα | 9.19 | 1.61 | 0.109 | |
| LP2 O1 | σ* O2-H2 | 26.02 | 1.18 | 1.159 | LP2 O2 | π* C2-Cα | 48.19 | 0.64 | 0.170 | |
| LP1 O1 | σ* O2-H2 | 4.08 | 1.57 | 0.072 | LP1 O2 | σ* C2-Cα | 9.42 | 1.61 | 0.110 | |
| LP2 O1 | σ* O2-H2 | 30.58 | 1.18 | 0.171 | LP2 O2 | π* C2-Cα | 47.57 | 0.64 | 0.167 | |
| LP1 O1 | σ* O2-H2 | 4.05 | 1.58 | 0.072 | LP1 O2 | σ* C2-Cα | 10.08 | 1.58 | 0.113 | |
| LP2 O1 | σ* O2-H2 | 29.01 | 1.18 | 0.167 | LP2 O2 | π* C2-Cβ | 43.47 | 0.67 | 0.161 | |
| LP1 O1 | σ* O2-H2 | 4.10 | 1.57 | 0.072 | LP1 O2 | σ* C2-Cα | 9.46 | 1.61 | 0.110 | |
| LP2 O1 | σ* O2-H2 | 30.88 | 1.18 | 0.173 | LP2 O2 | π* C2-Cα | 49.06 | 0.64 | 0.170 | |
| LP1 O1 | σ* O2-H2 | 4.15 | 1.57 | 0.072 | LP1 O2 | σ* C2-Cα | 9.67 | 1.60 | 0.111 | |
| LP2 O1 | σ* O2-H2 | 31.31 | 1.19 | 0.174 | LP2 O2 | π* C2-Cα | 48.22 | 0.63 | 0.169 | |
| LP1 O1 | σ* O2-H2 | 4.36 | 1.54 | 0.074 | LP1 O2 | σ* C2-Cα | 9.70 | 1.63 | 0.112 | |
| LP2 O1 | σ* O2-H2 | 37.44 | 1.17 | 0.189 | LP2 O2 | π* C2-Cα | 55.49 | 0.65 | 0.178 | |
| LP1 O1 | σ* O2-H2 | 4.64 | 1.51 | 0.076 | LP1 O2 | σ* C2-Cα | 9.82 | 1.60 | 0.112 | |
| LP2 O1 | σ* O2-H2 | 45.67 | 1.16 | 0.208 | LP2 O2 | π* C2-Cα | 60.70 | 0.64 | 0.184 |