Literature DB >> 24990744

Structural basis for outer membrane lipopolysaccharide insertion.

Haohao Dong1, Quanju Xiang2, Yinghong Gu3, Zhongshan Wang4, Neil G Paterson5, Phillip J Stansfeld6, Chuan He7, Yizheng Zhang8, Wenjian Wang9, Changjiang Dong3.   

Abstract

Lipopolysaccharide (LPS) is essential for most Gram-negative bacteria and has crucial roles in protection of the bacteria from harsh environments and toxic compounds, including antibiotics. Seven LPS transport proteins (that is, LptA-LptG) form a trans-envelope protein complex responsible for the transport of LPS from the inner membrane to the outer membrane, the mechanism for which is poorly understood. Here we report the first crystal structure of the unique integral membrane LPS translocon LptD-LptE complex. LptD forms a novel 26-stranded β-barrel, which is to our knowledge the largest β-barrel reported so far. LptE adopts a roll-like structure located inside the barrel of LptD to form an unprecedented two-protein 'barrel and plug' architecture. The structure, molecular dynamics simulations and functional assays suggest that the hydrophilic O-antigen and the core oligosaccharide of the LPS may pass through the barrel and the lipid A of the LPS may be inserted into the outer leaflet of the outer membrane through a lateral opening between strands β1 and β26 of LptD. These findings not only help us to understand important aspects of bacterial outer membrane biogenesis, but also have significant potential for the development of novel drugs against multi-drug resistant pathogenic bacteria.

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Year:  2014        PMID: 24990744     DOI: 10.1038/nature13464

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   69.504


  42 in total

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Authors:  Bert van den Berg; Paul N Black; William M Clemons; Tom A Rapoport
Journal:  Science       Date:  2004-06-04       Impact factor: 47.728

2.  Chemical conditionality: a genetic strategy to probe organelle assembly.

Authors:  Natividad Ruiz; Brian Falcone; Daniel Kahne; Thomas J Silhavy
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

3.  The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.

Authors:  Heedeok Hong; Dimki R Patel; Lukas K Tamm; Bert van den Berg
Journal:  J Biol Chem       Date:  2006-01-12       Impact factor: 5.157

4.  The complex that inserts lipopolysaccharide into the bacterial outer membrane forms a two-protein plug-and-barrel.

Authors:  Elizaveta Freinkman; Shu-Sin Chng; Daniel Kahne
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-21       Impact factor: 11.205

5.  Structural basis for alginate secretion across the bacterial outer membrane.

Authors:  John C Whitney; Iain D Hay; Canhui Li; Paul D W Eckford; Howard Robinson; Maria F Amaya; Lynn F Wood; Dennis E Ohman; Christine E Bear; Bernd H Rehm; P Lynne Howell
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-21       Impact factor: 11.205

6.  Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein.

Authors:  Changjiang Dong; Konstantinos Beis; Jutta Nesper; Anne L Brunkan-Lamontagne; Bradley R Clarke; Chris Whitfield; James H Naismith
Journal:  Nature       Date:  2006-11-01       Impact factor: 49.962

7.  Cytoplasmic ATP hydrolysis powers transport of lipopolysaccharide across the periplasm in E. coli.

Authors:  Suguru Okuda; Elizaveta Freinkman; Daniel Kahne
Journal:  Science       Date:  2012-11-08       Impact factor: 47.728

8.  The Buccaneer software for automated model building. 1. Tracing protein chains.

Authors:  Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-08-19

9.  Crystal structure of the FimD usher bound to its cognate FimC-FimH substrate.

Authors:  Gilles Phan; Han Remaut; Tao Wang; William J Allen; Katharina F Pirker; Andrey Lebedev; Nadine S Henderson; Sebastian Geibel; Ender Volkan; Jun Yan; Micha B A Kunze; Jerome S Pinkner; Bradley Ford; Christopher W M Kay; Huilin Li; Scott J Hultgren; David G Thanassi; Gabriel Waksman
Journal:  Nature       Date:  2011-06-02       Impact factor: 49.962

10.  An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol.

Authors:  Huanting Liu; James H Naismith
Journal:  BMC Biotechnol       Date:  2008-12-04       Impact factor: 2.563

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  109 in total

1.  Lipopolysaccharide transport involves long-range coupling between cytoplasmic and periplasmic domains of the LptB2FGC extractor.

Authors:  Emily A Lundstedt; Brent W Simpson; Natividad Ruiz
Journal:  J Bacteriol       Date:  2020-12-23       Impact factor: 3.490

2.  Type 9 secretion system structures reveal a new protein transport mechanism.

Authors:  Frédéric Lauber; Justin C Deme; Susan M Lea; Ben C Berks
Journal:  Nature       Date:  2018-11-07       Impact factor: 49.962

Review 3.  Lipid trafficking across the Gram-negative cell envelope.

Authors:  Rahul Shrivastava; Shu-Sin Chng
Journal:  J Biol Chem       Date:  2019-08-16       Impact factor: 5.157

4.  Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens.

Authors:  Istvan Botos; Nadim Majdalani; Stephen J Mayclin; Jennifer Gehret McCarthy; Karl Lundquist; Damian Wojtowicz; Travis J Barnard; James C Gumbart; Susan K Buchanan
Journal:  Structure       Date:  2016-05-05       Impact factor: 5.006

5.  All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences.

Authors:  Sikander Hayat; Chris Sander; Debora S Marks; Arne Elofsson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-09       Impact factor: 11.205

6.  Structural basis for lipopolysaccharide extraction by ABC transporter LptB2FG.

Authors:  Qingshan Luo; Xu Yang; Shan Yu; Huigang Shi; Kun Wang; Le Xiao; Guangyu Zhu; Chuanqi Sun; Tingting Li; Dianfan Li; Xinzheng Zhang; Min Zhou; Yihua Huang
Journal:  Nat Struct Mol Biol       Date:  2017-04-10       Impact factor: 15.369

Review 7.  Insertion of proteins and lipopolysaccharide into the bacterial outer membrane.

Authors:  Istvan Botos; Nicholas Noinaj; Susan K Buchanan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-08-05       Impact factor: 6.237

8.  Disrupting Gram-Negative Bacterial Outer Membrane Biosynthesis through Inhibition of the Lipopolysaccharide Transporter MsbA.

Authors:  Mary Kate Alexander; Anh Miu; Angela Oh; Mike Reichelt; Hoangdung Ho; Cecile Chalouni; Sharada Labadie; Lan Wang; Jun Liang; Nicholas N Nickerson; Huiyong Hu; Lan Yu; Miaofen Du; Donghong Yan; Summer Park; Janice Kim; Min Xu; Benjamin D Sellers; Hans E Purkey; Nicholas J Skelton; Michael F T Koehler; Jian Payandeh; Vishal Verma; Yiming Xu; Christopher M Koth; Mireille Nishiyama
Journal:  Antimicrob Agents Chemother       Date:  2018-10-24       Impact factor: 5.191

9.  The architecture of the OmpC-MlaA complex sheds light on the maintenance of outer membrane lipid asymmetry in Escherichia coli.

Authors:  Jiang Yeow; Kang Wei Tan; Daniel A Holdbrook; Zhi-Soon Chong; Jan K Marzinek; Peter J Bond; Shu-Sin Chng
Journal:  J Biol Chem       Date:  2018-05-30       Impact factor: 5.157

10.  Backbone Hydrogen Bond Energies in Membrane Proteins Are Insensitive to Large Changes in Local Water Concentration.

Authors:  Henry J Lessen; Ananya Majumdar; Karen G Fleming
Journal:  J Am Chem Soc       Date:  2020-03-17       Impact factor: 15.419

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