Literature DB >> 24990307

In vivo incorporation of non-canonical amino acids by using the chemical aminoacylation strategy: a broadly applicable mechanistic tool.

Dennis A Dougherty1, Ethan B Van Arnam.   

Abstract

We describe a strategy for incorporating non-canonical amino acids site-specifically into proteins expressed in living cells, involving organic synthesis to chemically aminoacylate a suppressor tRNA, protein expression in Xenopus oocytes, and monitoring protein function, primarily by electrophysiology. With this protocol, a very wide range of non-canonical amino acids can be employed, allowing both systematic structure-function studies and the incorporation of reactive functionalities. Here, we present an overview of the methodology and examples meant to illustrate the versatility and power of the method as a tool for investigating protein structure and function.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Xenopus oocytes; backbone mutations; cation-pi interactions; fluorescence; nonsense suppression

Mesh:

Substances:

Year:  2014        PMID: 24990307      PMCID: PMC4155927          DOI: 10.1002/cbic.201402080

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  82 in total

1.  Mapping disulfide connectivity using backbone ester hydrolysis.

Authors:  P M England; H A Lester; D A Dougherty
Journal:  Biochemistry       Date:  1999-10-26       Impact factor: 3.162

2.  The Cationminus signpi Interaction.

Authors:  Jennifer C. Ma; Dennis A. Dougherty
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

3.  Addition of an alpha-hydroxy acid to the genetic code of bacteria.

Authors:  Jiantao Guo; Jiangyun Wang; J Christopher Anderson; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  "Chemical aminoacylation" of tRNA's.

Authors:  S M Hecht; B L Alford; Y Kuroda; S Kitano
Journal:  J Biol Chem       Date:  1978-07-10       Impact factor: 5.157

5.  In vivo incorporation of unnatural amino acids into ion channels in Xenopus oocyte expression system.

Authors:  M W Nowak; J P Gallivan; S K Silverman; C G Labarca; D A Dougherty; H A Lester
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

Review 6.  Atomic structure and dynamics of pentameric ligand-gated ion channels: new insight from bacterial homologues.

Authors:  Pierre-Jean Corringer; Marc Baaden; Nicolas Bocquet; Marc Delarue; Virginie Dufresne; Hugues Nury; Marie Prevost; Catherine Van Renterghem
Journal:  J Physiol       Date:  2009-12-07       Impact factor: 5.182

7.  The tethered agonist approach to mapping ion channel proteins--toward a structural model for the agonist binding site of the nicotinic acetylcholine receptor.

Authors:  L Li; W Zhong; N Zacharias; C Gibbs; H A Lester; D A Dougherty
Journal:  Chem Biol       Date:  2001-01

8.  A cation-pi interaction between extracellular TEA and an aromatic residue in potassium channels.

Authors:  Christopher A Ahern; Amy L Eastwood; Henry A Lester; Dennis A Dougherty; Richard Horn
Journal:  J Gen Physiol       Date:  2006-12       Impact factor: 4.086

9.  An engineered Tetrahymena tRNAGln for in vivo incorporation of unnatural amino acids into proteins by nonsense suppression.

Authors:  M E Saks; J R Sampson; M W Nowak; P C Kearney; F Du; J N Abelson; H A Lester; D A Dougherty
Journal:  J Biol Chem       Date:  1996-09-20       Impact factor: 5.157

10.  An electrostatic interaction between TEA and an introduced pore aromatic drives spring-in-the-door inactivation in Shaker potassium channels.

Authors:  Christopher A Ahern; Amy L Eastwood; Dennis A Dougherty; Richard Horn
Journal:  J Gen Physiol       Date:  2009-11-16       Impact factor: 4.086

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  23 in total

Review 1.  Atom-by-atom engineering of voltage-gated ion channels: magnified insights into function and pharmacology.

Authors:  Stephan A Pless; Robin Y Kim; Christopher A Ahern; Harley T Kurata
Journal:  J Physiol       Date:  2015-03-13       Impact factor: 5.182

2.  Heterologous expression and nonsense suppression provide insights into agonist behavior at α6β2 nicotinic acetylcholine receptors.

Authors:  Michael R Post; Walrati Limapichat; Henry A Lester; Dennis A Dougherty
Journal:  Neuropharmacology       Date:  2015-04-20       Impact factor: 5.250

3.  A Conserved Residue Cluster That Governs Kinetics of ATP-dependent Gating of Kir6.2 Potassium Channels.

Authors:  Roger S Zhang; Jordan D Wright; Stephan A Pless; John-Jose Nunez; Robin Y Kim; Jenny B W Li; Runying Yang; Christopher A Ahern; Harley T Kurata
Journal:  J Biol Chem       Date:  2015-05-01       Impact factor: 5.157

Review 4.  Mutagenesis computer experiments in pentameric ligand-gated ion channels: the role of simulation tools with different resolution.

Authors:  Alessandro Crnjar; Federico Comitani; Claudio Melis; Carla Molteni
Journal:  Interface Focus       Date:  2019-04-19       Impact factor: 3.906

Review 5.  Future prospects for noncanonical amino acids in biological therapeutics.

Authors:  Arlinda Rezhdo; Mariha Islam; Manjie Huang; James A Van Deventer
Journal:  Curr Opin Biotechnol       Date:  2019-04-08       Impact factor: 9.740

6.  Cation-π interactions: computational analyses of the aromatic box motif and the fluorination strategy for experimental evaluation.

Authors:  Matthew R Davis; Dennis A Dougherty
Journal:  Phys Chem Chem Phys       Date:  2015-11-21       Impact factor: 3.676

7.  A triad of residues is functionally transferrable between 5-HT3 serotonin receptors and nicotinic acetylcholine receptors.

Authors:  Richard Mosesso; Dennis A Dougherty
Journal:  J Biol Chem       Date:  2018-01-03       Impact factor: 5.157

Review 8.  Incorporation of Non-Canonical Amino Acids.

Authors:  Lilia Leisle; Francis Valiyaveetil; Ryan A Mehl; Christopher A Ahern
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

9.  Engineering the glutamate transporter homologue GltPh using protein semisynthesis.

Authors:  Paul J Focke; Alvin W Annen; Francis I Valiyaveetil
Journal:  Biochemistry       Date:  2015-02-17       Impact factor: 3.162

10.  An Unaltered Orthosteric Site and a Network of Long-Range Allosteric Interactions for PNU-120596 in α7 Nicotinic Acetylcholine Receptors.

Authors:  Christopher B Marotta; Henry A Lester; Dennis A Dougherty
Journal:  Chem Biol       Date:  2015-07-23
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