| Literature DB >> 24984562 |
Edward B Breitschwerdt1, Barbara C Hegarty, Barbara A Qurollo, Tais B Saito, Ricardo G Maggi, Lucas S Blanton, Donald H Bouyer.
Abstract
BACKGROUND: Anaplasmosis, caused by Anaplasma phagocytophilum and Anaplasma platys, and ehrlichiosis, caused by Ehrlichia chaffeensis, Ehrlichia ewingii, the "Panola Mountain Ehrlichia" and Ehrlichia muris-like pathogens have been identified as emerging tick borne infectious diseases in dogs and human patients. Persistent intravascular infection with these bacteria is well documented in dogs, but is less well documented in human beings.Entities:
Mesh:
Year: 2014 PMID: 24984562 PMCID: PMC4089936 DOI: 10.1186/1756-3305-7-298
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Conventional PCR primer sequences and thermocycler conditions for assays used in this study
| 420 bp | ||
| | | For 25 μL mix: 12.5 μL MyTaq HS mix (Bioline), 0.2 μL 100 μM each primer (IDT® DNA Technology), 7.3 μl molecular grade water, + 5 μl template DNA. Denaturation 2 min @95°C, then 55 cycles 15 sec @94°C, annealing 10 sec @64°C, extension 15 sec @72°C, final extension 30 sec @72°C. |
| 973 bp | ||
| | | As above except annealing and extension times extended to 25 and 30 sec |
| 300 bp | ||
| | | For 50 μl mix: 24 μl MyTaq HS Mix (2X) (Bioline), 1 μl 50 uM each primer (Sigma-Aldrich), 4 μl molecular grade water + 20 μl template DNA. Single hot start cycle 3 min @95°C, then 55 cycles denaturation 10 sec @94°C, annealing 15 sec @58°C, extension 15 sec @72°C, then a single cycle 30 sec @72°C. |
| 590 bp | ||
| | | For 25 μL mix: 12.5 μl MyTaq HS Mix (2X) (Bioline), 0.25 μl 50 uM each primer (Sigma-Aldrich), 7 μl molecular grade water + 5 μl template DNA. Single hot start cycle 3 min @95°C, then 55 cycles denaturation 15 sec @94°C, annealing 15 sec @58°C, extension 30 sec @72°C, then a single cycle 30 sec @72°C. |
| 215 bp | ||
| | | For 25 μl mix: 12.5 μl of MyTaq HS Mix (2X) (Bioline), 0.25 μl 50 μM each primer (Sigma-Aldrich), 2 μl molecular grade water + 10 μl template DNA. Single hot start cycle 3 min @95°C, then 55 cycles denaturation at 15 sec @94°C, annealing 15 sec @56°C, extension 30 sec @72°C, then a single cycle 1 min @72°C. |
| 520 bp | ||
| For 25 μL mix: 12.5 μl MyTaq HS Mix (2X) (Bioline), 0.3 μl 50 uM each primer (Sigma-Aldrich), 2 μl molecular grade water + 10 μl template DNA. Single hot start cycle 3 min @95°C, then 55 cycles denaturation 15 sec @94°C, annealing 10 sec @70°C, and extension 30 sec @72°C, then a single cycle 1 min @72°C. |
Summary of conventional PCR amplification and DNA sequencing results from whole blood, serum, WBC fractions and DH82, RF/6A or IES6 cell cultures tested between September 2011 and June 2012
| 09/2011 | +# | - | - | NT | NT | NT | NT | NT | NT | NT | NT | NT | NT | NT | NT |
| 12/2011 | +# | +* | +* | +# | - | - | - | NT | NT | NT | NT | NT | NT | NT | NT |
| 01/2012 | +# | +# | +#* | +# | - | +#* | - | - | +# | - | - | NT | NT | NT | NT |
| 02/2012 | +# | +# | - | - | +# | +* | - | - | - | +* | - | - | - | - | - |
| 03/2012 | +* | - | - | - | - | - | +* | +* | - | +* | - | - | - | - | - |
| 06/2012** | - | - | - | - | - | - | - | - | - | - | - | NT | NT | NT | NT |
Sample source or sources are designated for each testing time point.
Ech = Ehrlichia chaffeensis, Eew = Ehrlichia ewingii, Apl = Anaplasma platys, Ec = Ehrlichia canis.
All + results confirmed by DNA sequencing.
# = amplicon obtained from blood, serum or buffy coat fraction.
* = amplicon obtained from DH82, RF/6A or IES6 cell cultures.
NT = not tested.
** = post doxycycline treatment.
Confirmation of conventional PCR amplification results by DNA sequencing of and gene targets derived from blood or WBC samples from the mother, dog and daughter
| GEP | 99.7 | 99.7 | 99.9 | no | 99.7 | no | 99.7 | 99.7 | 99.9 |
| 100 | 99.2 | NA | no | 100 | NA | 100 | no | NA | |
| 96.6 | 100 | NA | no | 100 | NA | 96.6 | no | NA | |
| NA | NA | 99.6 | NA | NA | no | NA | NA | 99.6 | |
Based upon DNA sequence similarities, specimens from the dog and both family members contained the same genotypes.
Ech = Ehrlichia chaffeensis.
Eew = E. ewingii.
Apl = Anaplasma platys.
NA = not an applicable gene target for the particular Anaplasma or Ehrlichia species.
aNumbers represent % sequence identity to the following GenBank reference sequences: A. platys 16S M82801 from a dog, A. platys p44 GQ868750.1 from a Venezuela dog strain, E. chaffeensis 16S CP000236, complete genome of an Arkansas human strain, E. chaffeensis sodB CP000236, E. chaffeensis p28 human strains V8 (AF393394.1) and V4 (AF393390.1), E. ewingii 16S Accession NR_044747 from an Oklahoma dog strain, E. ewingii sodB (GenBank KC778986) from a naturally-infected dog procured through our diagnostic laboratory and validated by other E. ewingii gene targets, and E. ewingii p28 AF287961.1 from a dog strain and AF287962.1, AF287963.1 and AF287966.1 from human strains.