Literature DB >> 24976261

Using chemistry to investigate the molecular consequences of protein ubiquitylation.

Tharindumala Abeywardana1, Matthew R Pratt.   

Abstract

Chemistry has long played an indispensable role in biological discovery through the synthesis of homogeneous, structurally defined material. With continuing advances in the area of synthetic protein chemistry, chemists are able to prepare increasingly large and complex proteins that have enabled key biochemical experiments. Here, we describe some of the chemical methods that have been applied to the synthesis of ubiquitylated proteins, as ubiquitylation is a crucial post-translational modification that mediates a variety of important biological effects on substrate proteins.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  chemical ligation; peptide synthesis; protein chemistry; ubiquitin

Mesh:

Substances:

Year:  2014        PMID: 24976261     DOI: 10.1002/cbic.201402117

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  9 in total

1.  Comparison of native and non-native ubiquitin oligomers reveals analogous structures and reactivities.

Authors:  Grace H Pham; Ambar S J B Rana; E Nihal Korkmaz; Vivian H Trang; Qiang Cui; Eric R Strieter
Journal:  Protein Sci       Date:  2016-01-12       Impact factor: 6.725

2.  Synthesis of a Bis-thio-acetone (BTA) Analogue of the Lysine Isopeptide Bond and its Application to Investigate the Effects of Ubiquitination and SUMOylation on α-Synuclein Aggregation and Toxicity.

Authors:  Yuka E Lewis; Tharindumala Abeywardana; Yu Hsuan Lin; Ana Galesic; Matthew R Pratt
Journal:  ACS Chem Biol       Date:  2016-01-12       Impact factor: 5.100

Review 3.  Application of the protein semisynthesis strategy to the generation of modified chromatin.

Authors:  Matthew Holt; Tom Muir
Journal:  Annu Rev Biochem       Date:  2015-03-12       Impact factor: 23.643

Review 4.  Peeling away the layers of ubiquitin signaling complexities with synthetic ubiquitin-protein conjugates.

Authors:  Grace H Pham; Eric R Strieter
Journal:  Curr Opin Chem Biol       Date:  2015-06-18       Impact factor: 8.822

Review 5.  Biological and Physicochemical Functions of Ubiquitylation Revealed by Synthetic Chemistry Approaches.

Authors:  Daichi Morimoto; Erik Walinda; Kenji Sugase; Masahiro Shirakawa
Journal:  Int J Mol Sci       Date:  2017-05-27       Impact factor: 5.923

6.  Artificially Linked Ubiquitin Dimers Characterised Structurally and Dynamically by NMR Spectroscopy.

Authors:  Xiaohui Zhao; Maite Mißun; Tobias Schneider; Franziska Müller; Joachim Lutz; Martin Scheffner; Andreas Marx; Michael Kovermann
Journal:  Chembiochem       Date:  2019-06-24       Impact factor: 3.164

Review 7.  Catching a DUB in the act: novel ubiquitin-based active site directed probes.

Authors:  Reggy Ekkebus; Dennis Flierman; Paul P Geurink; Huib Ovaa
Journal:  Curr Opin Chem Biol       Date:  2014-12       Impact factor: 8.822

8.  Aromatic thiol-mediated cleavage of N-O bonds enables chemical ubiquitylation of folded proteins.

Authors:  Caroline E Weller; Abhinav Dhall; Feizhi Ding; Edlaine Linares; Samuel D Whedon; Nicholas A Senger; Elizabeth L Tyson; John D Bagert; Xiaosong Li; Ohara Augusto; Champak Chatterjee
Journal:  Nat Commun       Date:  2016-09-29       Impact factor: 14.919

Review 9.  Chemical ubiquitination for decrypting a cellular code.

Authors:  Mathew Stanley; Satpal Virdee
Journal:  Biochem J       Date:  2016-05-15       Impact factor: 3.857

  9 in total

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