| Literature DB >> 24958999 |
Pavel Majek1, Zuzana Riedelova-Reicheltova1, Jiri Suttnar1, Klara Pecankova1, Jaroslav Cermak1, Jan E Dyr1.
Abstract
The goal of this study was to explore the plasma proteome of myelodysplastic syndrome (MDS) patients with refractory anemia with excess blasts subtype 2 (RAEB-2) in comparison to healthy controls. 20 plasma samples were separated with 2D electrophoresis and statistically processed with Progenesis SameSpots software. 47 significantly differing (P < 0.05) spots were observed, and 27 different proteins were identified by nano-LC-MS/MS. Mass spectrometry-based relative label-free quantification showed a 2-fold increase of the leucine-rich alpha-2-glycoprotein (LRAG) peptide levels in the RAEB-2 group. Changes in the fragments of the inter-alpha-trypsin inhibitor heavy chain H4 (ITIH4) protein were observed. Western blot analysis showed no differences in albumin and ITIH4 levels, while increased expression was observed for LRAG in the RAEB-2 group. Quantification using ELISA showed decreased plasma level of alpha-2-HS glycoprotein in the RAEB-2 group. In conclusion, this is the first time that alpha-2-HS glycoprotein and LRAG were proposed as new biomarkers of RAEB-2 and advanced MDS, respectively. Alpha-2-HS glycoprotein, a protein involved in the bone marrow development and previously proposed as a MDS biomarker candidate, was significantly decreased in RAEB-2. Increased expression and changes in modification(s) were observed for LRAG, a protein involved in granulocytic and neutrophil differentiation, and angiogenesis.Entities:
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Year: 2014 PMID: 24958999 PMCID: PMC4055597 DOI: 10.1155/2014/178709
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Figure 1Positions of all the 47 unique spots that differed significantly (P < 0.05) in their normalized volumes when the RAEB-2 and control groups were compared are displayed on an illustrative 2D gel of a patient sample.
List of spots that differed significantly when RAEB-2 patients were compared with healthy controls.
| Spot |
| Fold | Protein | Peptides | AC | SC (%) |
|---|---|---|---|---|---|---|
| 1 | 0.0002 | −3.8 | Serum albumin | 20 | P02768 | 56 |
| Fibrinogen alpha chain | 2 | P02671 | 3 | |||
| Hemopexin | 2 | P02790 | 20 | |||
| 2 | 0.008 | −3.3 | Serum albumin | 5 | P02768 | 18 |
| 3 | 0.001 | −2.8 | Serum albumin | 18 | P02768 | 46 |
| Hemopexin | 3 | P02790 | 23 | |||
| 4 | 0.004 | −2.7 | Plasma protease C1 inhibitor | 5 | P05155 | 15 |
| 5 | 0.0001 | −2.4 | Alpha-2-HS glycoprotein | 2 | P02765 | 17 |
| Kininogen-1 | 3 | P01042 | 7 | |||
| Corticosteroid-binding globulin | 2 | P08185 | 14 | |||
| 6 | 0.003 | −2.4 | Serum albumin | 5 | P02768 | 13 |
| 7 | 0.007 | −2.4 | Serum albumin | 12 | P02768 | 31 |
| 8 | 0.004 | −2.2 | Serum albumin | 22 | P02768 | 49 |
| 9 | 0.0005 | −2.2 | Serum albumin | 24 | P02768 | 59 |
| 10 | 0.024 | 2.1 | Apolipoprotein A-I | 2 | P02647 | 8 |
| C-reactive protein | 4 | P02741 | 20 | |||
| 11 | 0.008 | −2.1 | Serum albumin | 15 | P02768 | 43 |
| Protein Z-dependent protease inhibitor | 2 | Q9UK55 | 5 | |||
| 12 | 0.016 | 2.1 | Unidentified | |||
| 13 | 0.017 | 1.9 | Apolipoprotein A-IV | 3 | P06727 | 12 |
| Complement factor I | 2 | P05156 | 8 | |||
| 14 | 0.002 | −1.9 | Inter-alpha-trypsin inhibitor heavy chain H4 | 5 | Q14624 | 11 |
| 15 | 0.02 | 1.9 | Serum albumin | 6 | P02768 | 16 |
| Prothrombin | 4 | P00734 | 17 | |||
| Histidine-rich glycoprotein | 2 | P04196 | 4 | |||
| 16 | 0.001 | −1.9 | Alpha-2-HS glycoprotein | 2 | P02765 | 15 |
| Kininogen-1 | 2 | P01042 | 4 | |||
| 17 | 0.011 | −1.9 | Serum albumin | 11 | P02768 | 26 |
| Hemopexin | 2 | P02790 | 16 | |||
| 18 | 0.022 | −1.9 | Serum albumin | 7 | P02768 | 13 |
| 19 | 0.0003 | 1.8 | Leucine-rich alpha-2-glycoprotein | 7 | P02750 | 30 |
| Alpha-1-antichymotrypsin | 2 | P01011 | 8 | |||
| 20 | 0.003 | 1.8 | Leucine-rich alpha-2-glycoprotein | 5 | P02750 | 28 |
| 21 | 0.039 | −1.7 | Unidentified | |||
| 22 | 0.002 | −1.7 | Serum albumin | 3 | P02768 | 12 |
| 23 | 0.029 | 1.7 | Haptoglobin | 4 | P00738 | 18 |
| 24 | 0.004 | 1.7 | Inter-alpha-trypsin inhibitor heavy chain H4 | 13 | Q14624 | 20 |
| Alpha-1-antitrypsin | 7 | P01009 | 37 | |||
| Angiotensinogen | 2 | P01019 | 9 | |||
| Prothrombin | 2 | P00734 | 14 | |||
| 25 | 0.006 | −1.6 | Serum albumin | 5 | P02768 | 14 |
| 26 | 0.01 | −1.6 | Unidentified | |||
| 27 | 0.027 | −1.6 | Inter-alpha-trypsin inhibitor heavy chain H4 | 5 | Q14624 | 6 |
| 28 | 0.011 | −1.6 | Serum albumin | 5 | P02768 | 11 |
| Coagulation factor XII | 3 | P00748 | 12 | |||
| 29 | 0.0008 | 1.6 | Ficolin-2 | 1 | Q15485 | 4 |
| 30 | 0.02 | −1.5 | Serum albumin | 4 | P02768 | 13 |
| Apolipoprotein A-IV | 2 | P06727 | 7 | |||
| 31 | 0.0006 | −1.5 | Clusterin | 3 | P10909 | 12 |
| 32 | 0.001 | −1.5 | Unidentified | |||
| 33 | 0.004 | −1.5 | Clusterin | 2 | P10909 | 7 |
| 34 | 0.016 | −1.5 | Beta-2-glycoprotein 1 | 3 | P02749 | 21 |
| 35 | 0.002 | −1.5 | Prothrombin | 7 | P00734 | 26 |
| Inter-alpha-trypsin inhibitor heavy chain H4 | 2 | Q14624 | 6 | |||
| Alpha-1B-glycoprotein | 2 | P04217 | 9 | |||
| 36 | 0.009 | −1.4 | Tetranectin | 4 | P05452 | 37 |
| 37 | 0.002 | −1.4 | Tetranectin | 2 | P05452 | 16 |
| 38 | 0.0002 | 1.4 | Alpha-1-antichymotrypsin | 12 | P01011 | 47 |
| Corticosteroid-binding globulin | 3 | P08185 | 11 | |||
| 39 | 0.014 | −1.4 | Alpha-1-antichymotrypsin | 3 | P01011 | 11 |
| Inter-alpha-trypsin inhibitor heavy chain H4 | 3 | Q14624 | 6 | |||
| Clusterin | 4 | P10909 | 14 | |||
| 40 | 0.003 | −1.4 | Clusterin | 4 | P10909 | 14 |
| 41 | 0.017 | 1.4 | Alpha-1-antichymotrypsin | 2 | P01011 | 8 |
| Zinc-alpha-2 glycoprotein | 2 | P25311 | 9 | |||
| 42 | 0.03 | −1.3 | Inter-alpha-trypsin inhibitor heavy chain H4 | 4 | Q14624 | 8 |
| 43 | 0.002 | −1.3 | Clusterin | 4 | P10909 | 15 |
| 44 | 0.027 | 1.3 | Inter-alpha-trypsin inhibitor heavy chain H4 | 13 | Q14624 | 19 |
| Alpha-1-antitrypsin | 3 | P01009 | 18 | |||
| Complement component C9 | 2 | P02748 | 6 | |||
| 45 | 0.012 | −1.3 | Clusterin | 3 | P10909 | 17 |
| Inter-alpha-trypsin inhibitor heavy chain H4 | 2 | Q14624 | 3 | |||
| 46 | 0.037 | −1.3 | Clusterin | 4 | P10909 | 17 |
| Inter-alpha-trypsin inhibitor heavy chain H4 | 3 | Q14624 | 4 | |||
| 47 | 0.045 | 1.2 | Protein AMBP | 2 | P02760 | 12 |
P: ANOVA P value; fold: fold difference (multiplication) when comparing RAEB-2 patients and healthy controls (+fold when the normalized volumes increased in RAEB-2); protein: protein identification; peptides: number of unique peptides fulfilling a minimal Mascot score for identity; AC: accession number (SWISS-PROT); SC: protein sequence coverage.
Figure 2Principal component analysis based on spots that significantly differed (P < 0.05) between the compared groups was performed to assess whether the grouping of patient and healthy controls (based on 2D SDS-PAGE) reflects their stratification using classical clinical diagnosis [9–11]. PCA showed that the samples separated into two sample groups corresponding to the RAEB-2 (blue dots) and healthy control groups (pink dots).
Figure 3Western blot analysis was performed for three different proteins (1D SDS-PAGE, 12% resolving gel): albumin (a), ITIH4 (b), and LRAG (c). No difference was observed for albumin and ITIH4, while an increase (approximately 30%) was observed for LRAG in the RAEB-2 group as estimated using ImageJ software. Pooled samples (pooled equal volumes of individual samples) were used for patient (MDS) and healthy control (C) groups.