Literature DB >> 24943494

An approach to sequential NMR assignments of proteins: application to chemical shift restraint-based structure prediction.

Christoph Wiedemann1, Peter Bellstedt, Christian Herbst, Matthias Görlach, Ramadurai Ramachandran.   

Abstract

A procedure for the simultaneous acquisition of {HNCOCANH & HCCCONH} chemical shift correlation spectra employing sequential [Formula: see text] data acquisition for moderately sized proteins is presented. The suitability of the approach for obtaining sequential resonance assignments, including complete [Formula: see text] and [Formula: see text] chemical shift information, is demonstrated experimentally for a [Formula: see text] and [Formula: see text] labelled sample of the C-terminal winged helix (WH) domain of the minichromosome maintenance (MCM) complex of Sulfolobus solfataricus. The chemical shift information obtained was used to calculate the global fold of this winged helix domain via CS-Rosetta. This demonstrates that our procedure provides a reliable and straight-forward protocol for a quick global fold determination of moderately-sized proteins.

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Year:  2014        PMID: 24943494     DOI: 10.1007/s10858-014-9842-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

1.  Consistent blind protein structure generation from NMR chemical shift data.

Authors:  Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H Arrowsmith; Thomas Szyperski; Gaetano T Montelione; David Baker; Ad Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-07       Impact factor: 11.205

2.  Broadband homonuclear TOCSY with amplitude and phase-modulated RF mixing schemes.

Authors:  Anika Kirschstein; Christian Herbst; Kerstin Riedel; Michela Carella; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-03-04       Impact factor: 2.835

3.  Improving 3D structure prediction from chemical shift data.

Authors:  Gijs van der Schot; Zaiyong Zhang; Robert Vernon; Yang Shen; Wim F Vranken; David Baker; Alexandre M J J Bonvin; Oliver F Lange
Journal:  J Biomol NMR       Date:  2013-08-03       Impact factor: 2.835

4.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  The use of heteronuclear cross-polarization for backbone assignment of (2)H-, (15)N- and (13)C-labeled proteins: A pulse scheme for triple-resonance 4D correlation of sequential amide protons and (15)N.

Authors:  M Shirakawa; M Wälchli; M Shimizu; Y Kyogoku
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

6.  PLUSH TACSY: Homonuclear planar TACSY with two-band selective shaped pulses applied to C(α),C' transfer and C (β),C (aromatic) correlations.

Authors:  T Carlomagno; M Maurer; M Sattler; M G Schwendinger; S J Glaser; C Griesinger
Journal:  J Biomol NMR       Date:  1996-09       Impact factor: 2.835

7.  Characterizing the use of perdeuteration in NMR studies of large proteins: 13C, 15N and 1H assignments of human carbonic anhydrase II.

Authors:  R A Venters; B T Farmer; C A Fierke; L D Spicer
Journal:  J Mol Biol       Date:  1996-12-20       Impact factor: 5.469

8.  Side chain and backbone assignments in isotopically labeled proteins from two heteronuclear triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  FEBS Lett       Date:  1992-12-21       Impact factor: 4.124

9.  Complete backbone and DENQ side chain NMR assignments in proteins from a single experiment: implications to structure-function studies.

Authors:  Jithender G Reddy; Ramakrishna V Hosur
Journal:  J Struct Funct Genomics       Date:  2014-02-18

10.  Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation.

Authors:  Oliver F Lange; David Baker
Journal:  Proteins       Date:  2012-03
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  3 in total

1.  HN-NCA heteronuclear TOCSY-NH experiment for (1)H(N) and (15)N sequential correlations in ((13)C, (15)N) labelled intrinsically disordered proteins.

Authors:  Christoph Wiedemann; Nishit Goradia; Sabine Häfner; Christian Herbst; Matthias Görlach; Oliver Ohlenschläger; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2015-08-18       Impact factor: 2.835

2.  Multiple acquisition of magic angle spinning solid-state NMR experiments using one receiver: application to microcrystalline and membrane protein preparations.

Authors:  T Gopinath; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

Review 3.  Archaeal MCM Proteins as an Analog for the Eukaryotic Mcm2-7 Helicase to Reveal Essential Features of Structure and Function.

Authors:  Justin M Miller; Eric J Enemark
Journal:  Archaea       Date:  2015-10-11       Impact factor: 3.273

  3 in total

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