Literature DB >> 24940232

A new polymorph of N-(2-{N'-[(1E)-2-hy-droxy-benzyl-idene]hydrazinecarbon-yl}phen-yl)benzamide.

Shaaban K Mohamed1, Joel T Mague2, Mehmet Akkurt3, Herman Potgieter4, Mustafa R Albayati5.   

Abstract

The title compound, C21H17N3O3, is a new polymorph of an already published structure [Shashidhar et al. (2006 ▶). Acta Cryst. E62, o4473-o4475]. The previously reported structure crystallizes in the monoclinic space group C2/c, whereas the structure reported here is in the tetra-gonal space group I41/a. The bond lengths and angles are similar in both structures. The mol-ecule adopts an extended conformation via intra-molecular N-H⋯O and O-H⋯N hydrogen bonds; the terminal phenyl ring and the hy-droxy-lphenyl ring are twisted with respect to the central benzene ring by 44.43 (7) and 21.99 (8)°, respectively. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, weak C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions into a three-dimensional supra-molecular network.

Entities:  

Year:  2014        PMID: 24940232      PMCID: PMC4051047          DOI: 10.1107/S1600536814010010

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For different medicinal functions of hydrazide–hydrazone compounds, see: Bharti et al. (2010 ▶); Loncle et al. (2004 ▶); Garoufalias et al. (2002 ▶); Vicini et al. (2002 ▶); Sondhi et al. (2006 ▶); Kaymakçıoğlu & Rollas (2002 ▶); Rahman et al. (2005 ▶); Ragavendran et al. (2007 ▶); Çakır et al. (2001 ▶); Terzioglu & Gursoy (2003 ▶); Vicini et al. (2009 ▶). For a monoclinic polymorph of the title compound, see: Shashidhar et al. (2006 ▶).

Experimental

Crystal data

C21H17N3O3 M = 359.38 Tetragonal, a = 26.7145 (14) Å c = 10.1160 (5) Å V = 7219.4 (8) Å3 Z = 16 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.22 × 0.19 × 0.15 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▶) T min = 0.80, T max = 0.99 37068 measured reflections 4868 independent reflections 3625 reflections with I > 2σ(I) R int = 0.049

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.107 S = 1.04 4868 reflections 244 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2013 ▶); cell refinement: SAINT (Bruker, 2013 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814010010/xu5789sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814010010/xu5789Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814010010/xu5789Isup3.cml CCDC reference: 1000727 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H17N3O3Dx = 1.323 Mg m3
Mr = 359.38Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 9997 reflections
Hall symbol: -I 4adθ = 2.2–29.4°
a = 26.7145 (14) ŵ = 0.09 mm1
c = 10.1160 (5) ÅT = 150 K
V = 7219.4 (8) Å3Block, pale-yellow
Z = 160.22 × 0.19 × 0.15 mm
F(000) = 3008
Bruker SMART APEX CCD diffractometer4868 independent reflections
Radiation source: fine-focus sealed tube3625 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.049
Detector resolution: 8.3660 pixels mm-1θmax = 29.5°, θmin = 2.2°
φ and ω scansh = −36→36
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −36→36
Tmin = 0.80, Tmax = 0.99l = −13→13
37068 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.046H-atom parameters constrained
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0318P)2 + 5.367P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4868 reflectionsΔρmax = 0.23 e Å3
244 parametersΔρmin = −0.21 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.56564 (4)0.41265 (4)0.31994 (10)0.0379 (3)
O20.65352 (4)0.27173 (4)0.11479 (12)0.0444 (4)
O30.67750 (4)0.17105 (4)−0.15220 (12)0.0461 (4)
N10.72994 (4)0.23746 (4)−0.02418 (12)0.0323 (3)
N20.73567 (4)0.27577 (4)0.06534 (12)0.0343 (4)
N30.61447 (4)0.35295 (4)0.22122 (12)0.0327 (3)
C10.52568 (5)0.35160 (5)0.18534 (14)0.0307 (4)
C20.52601 (5)0.33600 (5)0.05509 (16)0.0372 (4)
C30.48315 (6)0.31576 (6)−0.00106 (17)0.0416 (5)
C40.44051 (6)0.30914 (5)0.07402 (17)0.0407 (5)
C50.44026 (6)0.32438 (7)0.20375 (18)0.0521 (6)
C60.48221 (6)0.34632 (7)0.25975 (16)0.0457 (5)
C70.57029 (5)0.37577 (5)0.24815 (14)0.0302 (4)
C80.66281 (5)0.36385 (5)0.26991 (14)0.0310 (4)
C90.67193 (6)0.40316 (6)0.35685 (16)0.0401 (5)
C100.71960 (6)0.41150 (6)0.40559 (16)0.0419 (5)
C110.75900 (6)0.38104 (6)0.36873 (15)0.0389 (5)
C120.75057 (5)0.34228 (5)0.28113 (14)0.0342 (4)
C130.70295 (5)0.33311 (5)0.22863 (14)0.0298 (4)
C140.69475 (5)0.29129 (5)0.13280 (15)0.0325 (4)
C150.76871 (5)0.22376 (6)−0.08880 (15)0.0378 (5)
C160.76600 (5)0.18314 (5)−0.18336 (14)0.0333 (4)
C170.80939 (6)0.16779 (7)−0.24892 (18)0.0525 (6)
C180.80889 (7)0.12900 (8)−0.33838 (18)0.0565 (6)
C190.76431 (6)0.10478 (7)−0.36461 (16)0.0476 (5)
C200.72072 (6)0.11928 (6)−0.30239 (16)0.0416 (5)
C210.72114 (5)0.15829 (5)−0.21138 (14)0.0320 (4)
H20.555600.339100.003900.0450*
H2A0.765800.291500.068800.0410*
H30.483200.30640−0.091700.0500*
H3A0.613600.323500.175900.0390*
H3B0.683400.19490−0.100300.0550*
H40.411600.294200.036300.0490*
H50.411000.319800.255700.0620*
H60.481300.357700.348700.0550*
H90.645200.424500.383000.0480*
H100.725300.438400.465000.0500*
H110.791600.386700.403300.0470*
H120.777700.321400.255900.0410*
H150.799700.24040−0.074600.0450*
H170.840000.18460−0.231300.0630*
H180.838800.11900−0.381600.0680*
H190.763700.07790−0.426100.0570*
H200.690200.10250−0.321800.0500*
U11U22U33U12U13U23
O10.0422 (6)0.0323 (5)0.0391 (6)0.0078 (4)−0.0023 (4)−0.0068 (4)
O20.0287 (5)0.0375 (6)0.0669 (8)−0.0050 (4)0.0089 (5)−0.0155 (5)
O30.0265 (5)0.0485 (6)0.0633 (8)−0.0034 (4)0.0024 (5)−0.0142 (5)
N10.0298 (6)0.0300 (6)0.0370 (6)0.0003 (4)0.0016 (5)−0.0009 (5)
N20.0283 (6)0.0334 (6)0.0412 (7)−0.0039 (5)0.0043 (5)−0.0057 (5)
N30.0301 (6)0.0276 (5)0.0404 (7)0.0001 (4)0.0010 (5)−0.0059 (5)
C10.0298 (6)0.0250 (6)0.0372 (7)0.0026 (5)0.0028 (6)0.0027 (5)
C20.0300 (7)0.0372 (7)0.0444 (9)−0.0025 (6)0.0084 (6)−0.0096 (6)
C30.0362 (8)0.0401 (8)0.0485 (9)−0.0030 (6)0.0035 (7)−0.0153 (7)
C40.0318 (7)0.0340 (7)0.0564 (10)−0.0049 (6)0.0011 (7)0.0010 (7)
C50.0329 (8)0.0766 (12)0.0467 (10)−0.0075 (8)0.0087 (7)0.0117 (9)
C60.0364 (8)0.0676 (11)0.0332 (8)−0.0010 (7)0.0047 (6)0.0041 (7)
C70.0334 (7)0.0261 (6)0.0310 (7)0.0022 (5)0.0029 (5)0.0023 (5)
C80.0320 (7)0.0292 (6)0.0318 (7)−0.0013 (5)0.0013 (5)0.0026 (5)
C90.0398 (8)0.0375 (8)0.0430 (9)0.0015 (6)−0.0007 (7)−0.0071 (7)
C100.0448 (8)0.0431 (8)0.0379 (8)−0.0041 (7)−0.0041 (7)−0.0067 (7)
C110.0355 (7)0.0481 (9)0.0330 (8)−0.0050 (6)−0.0040 (6)0.0011 (6)
C120.0322 (7)0.0374 (7)0.0331 (7)−0.0010 (5)0.0033 (6)0.0039 (6)
C130.0317 (7)0.0278 (6)0.0298 (7)−0.0026 (5)0.0042 (5)0.0035 (5)
C140.0303 (7)0.0275 (6)0.0398 (8)−0.0007 (5)0.0047 (6)0.0022 (6)
C150.0265 (7)0.0440 (8)0.0428 (9)−0.0055 (6)0.0024 (6)−0.0054 (7)
C160.0270 (6)0.0403 (8)0.0325 (7)−0.0001 (5)−0.0004 (5)−0.0015 (6)
C170.0299 (8)0.0763 (12)0.0514 (10)−0.0046 (8)0.0050 (7)−0.0231 (9)
C180.0407 (9)0.0768 (13)0.0520 (11)0.0056 (8)0.0063 (8)−0.0239 (9)
C190.0531 (10)0.0507 (9)0.0390 (9)0.0032 (7)−0.0011 (7)−0.0118 (7)
C200.0407 (8)0.0441 (8)0.0399 (9)−0.0047 (7)−0.0063 (7)−0.0033 (7)
C210.0284 (6)0.0339 (7)0.0336 (7)0.0020 (5)−0.0023 (5)0.0049 (6)
O1—C71.2303 (17)C12—C131.4002 (19)
O2—C141.2326 (17)C13—C141.495 (2)
O3—C211.3542 (17)C15—C161.448 (2)
O3—H3B0.8400C16—C211.3990 (19)
N1—N21.3751 (16)C16—C171.397 (2)
N1—C151.2783 (18)C17—C181.376 (3)
N2—C141.3537 (18)C18—C191.381 (3)
N3—C71.3560 (17)C19—C201.379 (2)
N3—C81.4125 (17)C20—C211.391 (2)
N2—H2A0.9100C2—H20.9500
N3—H3A0.9100C3—H30.9500
C1—C71.4970 (19)C4—H40.9500
C1—C21.382 (2)C5—H50.9500
C1—C61.391 (2)C6—H60.9500
C2—C31.388 (2)C9—H90.9500
C3—C41.381 (2)C10—H100.9500
C4—C51.374 (2)C11—H110.9500
C5—C61.386 (2)C12—H120.9500
C8—C131.4137 (19)C15—H150.9500
C8—C91.391 (2)C17—H170.9500
C9—C101.384 (2)C18—H180.9500
C10—C111.382 (2)C19—H190.9500
C11—C121.381 (2)C20—H200.9500
C21—O3—H3B108.00C16—C17—C18121.69 (15)
N2—N1—C15117.37 (11)C17—C18—C19119.18 (17)
N1—N2—C14118.04 (11)C18—C19—C20120.59 (17)
C7—N3—C8129.27 (12)C19—C20—C21120.38 (15)
C14—N2—H2A124.00O3—C21—C20118.32 (13)
N1—N2—H2A118.00C16—C21—C20119.78 (13)
C7—N3—H3A118.00O3—C21—C16121.90 (12)
C8—N3—H3A112.00C1—C2—H2120.00
C6—C1—C7118.60 (13)C3—C2—H2120.00
C2—C1—C6119.38 (13)C2—C3—H3120.00
C2—C1—C7121.98 (12)C4—C3—H3120.00
C1—C2—C3120.16 (14)C3—C4—H4120.00
C2—C3—C4120.37 (15)C5—C4—H4120.00
C3—C4—C5119.44 (15)C4—C5—H5120.00
C4—C5—C6120.79 (15)C6—C5—H5120.00
C1—C6—C5119.79 (15)C1—C6—H6120.00
N3—C7—C1114.44 (12)C5—C6—H6120.00
O1—C7—N3124.51 (13)C8—C9—H9120.00
O1—C7—C1121.04 (12)C10—C9—H9120.00
N3—C8—C13118.08 (12)C9—C10—H10120.00
N3—C8—C9122.42 (12)C11—C10—H10120.00
C9—C8—C13119.50 (13)C10—C11—H11120.00
C8—C9—C10120.53 (14)C12—C11—H11120.00
C9—C10—C11120.67 (15)C11—C12—H12119.00
C10—C11—C12119.37 (14)C13—C12—H12119.00
C11—C12—C13121.51 (13)N1—C15—H15120.00
C8—C13—C14120.96 (12)C16—C15—H15120.00
C8—C13—C12118.39 (12)C16—C17—H17119.00
C12—C13—C14120.65 (12)C18—C17—H17119.00
O2—C14—N2121.15 (13)C17—C18—H18120.00
O2—C14—C13122.92 (13)C19—C18—H18120.00
N2—C14—C13115.94 (11)C18—C19—H19120.00
N1—C15—C16120.78 (13)C20—C19—H19120.00
C15—C16—C21122.15 (12)C19—C20—H20120.00
C17—C16—C21118.38 (13)C21—C20—H20120.00
C15—C16—C17119.47 (13)
C15—N1—N2—C14178.84 (13)C9—C8—C13—C122.4 (2)
N2—N1—C15—C16178.99 (12)C9—C8—C13—C14−178.53 (13)
N1—N2—C14—O20.0 (2)C8—C9—C10—C110.1 (2)
N1—N2—C14—C13−179.85 (11)C9—C10—C11—C120.7 (2)
C8—N3—C7—O12.7 (2)C10—C11—C12—C130.0 (2)
C8—N3—C7—C1−175.82 (13)C11—C12—C13—C8−1.6 (2)
C7—N3—C8—C9−1.3 (2)C11—C12—C13—C14179.33 (13)
C7—N3—C8—C13178.23 (13)C8—C13—C14—O2−22.0 (2)
C6—C1—C2—C30.7 (2)C8—C13—C14—N2157.86 (13)
C7—C1—C2—C3−177.16 (13)C12—C13—C14—O2157.06 (14)
C2—C1—C6—C51.7 (2)C12—C13—C14—N2−23.07 (19)
C7—C1—C6—C5179.57 (15)N1—C15—C16—C17−177.66 (15)
C2—C1—C7—O1137.04 (15)N1—C15—C16—C212.1 (2)
C2—C1—C7—N3−44.39 (18)C15—C16—C17—C18179.19 (16)
C6—C1—C7—O1−40.8 (2)C21—C16—C17—C18−0.5 (2)
C6—C1—C7—N3137.75 (14)C15—C16—C21—O30.5 (2)
C1—C2—C3—C4−2.7 (2)C15—C16—C21—C20−179.54 (14)
C2—C3—C4—C52.3 (2)C17—C16—C21—O3−179.83 (14)
C3—C4—C5—C60.1 (3)C17—C16—C21—C200.2 (2)
C4—C5—C6—C1−2.1 (3)C16—C17—C18—C190.4 (3)
N3—C8—C9—C10177.83 (14)C17—C18—C19—C200.2 (3)
C13—C8—C9—C10−1.7 (2)C18—C19—C20—C21−0.5 (3)
N3—C8—C13—C12−177.16 (12)C19—C20—C21—O3−179.64 (14)
N3—C8—C13—C141.9 (2)C19—C20—C21—C160.4 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.912.022.9181 (15)171
N3—H3A···O20.911.852.6373 (16)143
O3—H3B···N10.841.852.6052 (16)148
C4—H4···O2ii0.952.603.3388 (19)135
C9—H9···O10.952.242.8751 (19)123
C12—H12···O1i0.952.473.2319 (17)137
C18—H18···O3iii0.952.533.417 (2)155
C17—H17···Cg1i0.952.733.6561 (18)166
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 phenyl ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O1i 0.912.022.9181 (15)171
N3—H3A⋯O20.911.852.6373 (16)143
O3—H3B⋯N10.841.852.6052 (16)148
C4—H4⋯O2ii 0.952.603.3388 (19)135
C12—H12⋯O1i 0.952.473.2319 (17)137
C18—H18⋯O3iii 0.952.533.417 (2)155
C17—H17⋯Cg1i 0.952.733.6561 (18)166

Symmetry codes: (i) ; (ii) ; (iii) .

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