| Literature DB >> 24936183 |
Fermín Segovia1, Rosemary Holt2, Michael Spencer2, Juan M Górriz3, Javier Ramírez3, Carlos G Puntonet4, Christophe Phillips5, Lindsay Chura2, Simon Baron-Cohen2, John Suckling2.
Abstract
The existence of an endophenotype of autism spectrum condition (ASC) has been recently suggested by several commentators. It can be estimated by finding differences between controls and people with ASC that are also present when comparing controls and the unaffected siblings of ASC individuals. In this work, we used a multivariate methodology applied on magnetic resonance images to look for such differences. The proposed procedure consists of combining a searchlight approach and a support vector machine classifier to identify the differences between three groups of participants in pairwise comparisons: controls, people with ASC and their unaffected siblings. Then we compared those differences selecting spatially collocated as candidate endophenotypes of ASC.Entities:
Keywords: MRI; autism spectrum condition; endophenotype; searchlight; support vector machine
Year: 2014 PMID: 24936183 PMCID: PMC4047979 DOI: 10.3389/fncom.2014.00060
Source DB: PubMed Journal: Front Comput Neurosci ISSN: 1662-5188 Impact factor: 2.380
Demographic details of participants.
| ASC | 52 | 35 | 17 | 14.49 | 1.74 | 12–18 | 104.6 | 15.89 | 73–146 |
| Siblings | 40 | 12 | 28 | 14.86 | 2.12 | 12–18 | 113.1 | 10.06 | 88–133 |
| Controls | 40 | 20 | 20 | 15.06 | 1.61 | 12–18 | 112.4 | 11.12 | 83–136 |
μ and σ are the average and the standard deviation, respectively.
Implementation of the SVM-based searchlight approach.
Figure 1Location of the significant regions (estimated through the Benjamini-Hochberg procedure with α = 0.05) when classifying controls vs. ASC (top) and controls vs. siblings (bottom). The intensity of the white color indicates the accuracy achieved for that region. The accuracy rate varies from 65.22 to 77.17% for the first classification and from 66.25 to 82.50% for the second one.
Figure 2Comparison of between-group difference maps shown in Figure . Red: significant regions for the controls vs. ASC participant's classification; blue: significant regions for the controls vs. siblings classification; white: the common regions for both classifications.
Size of the significant regions for classifications of control vs. ASC (second column) and controls vs. siblings (third column), grouped by anatomical region.
| Cerebelum (left) | 394 (9.71) | 821 (20.24) | 146 (3.60) |
| Parietal lobule (right) | 123 (9.33) | 162 (12.28) | 100 (7.58) |
| Occipital (left) | 239 (11.86) | 289 (14.34) | 74 (3.67) |
| Angular gyrus (left) | 75 (18.25) | 141 (34.31) | 71 (17.27) |
| Inferior frontal gyrus (left) | 89 (8.64) | 265 (25.73) | 67 (6.50) |
| Temporal gyrus (right) | 426 (10.71) | 377 (9.48) | 62 (1.56) |
| Cingulate gyrus (left) | 152 (11.27) | 197 (14.60) | 59 (4.37) |
| Parietal lobule (left) | 111 (6.95) | 79 (4.94) | 41 (2.57) |
| Parahippocampal gyrus (right) | 51 (13.35) | 75 (19.63) | 31 (8.12) |
| Hippocampus (left) | 36 (11.92) | 89 (29.47) | 30 (9.93) |
| Thalamus (right) | 64 (19.22) | 38 (11.41) | 27 (8.11) |
| Cerebelum (right) | 262 (6.05) | 273 (6.31) | 24 (0.55) |
| Vermis | 192 (26.82) | 44 (6.15) | 24 (3.35) |
| Cingulate gyrus (right) | 394 (29.76) | 62 (4.68) | 23 (1.74) |
| Area triangularis (left) | 101 (10.64) | 91 (9.59) | 21 (2.21) |
| Precuneus (right) | 296 (24.79) | 74 (6.20) | 18 (1.51) |
| Calcarine sulcus (left) | 31 (3.54) | 178 (20.32) | 17 (1.94) |
| Precuneus (left) | 33 (2.52) | 230 (17.60) | 15 (1.15) |
| Putamen (left) | 21 (5.98) | 79 (22.51) | 15 (4.27) |
| Thalamus (left) | 65 (18.90) | 139 (40.41) | 11 (3.20) |
| Globus pallidus (left) | 38 (43.18) | 11 (12.50) | 8 (9.09) |
| Middle temporal pole (right) | 43 (9.35) | 91 (19.78) | 7 (1.52) |
| Superior frontal gyrus (right) | 120 (3.94) | 146 (4.79) | 7 (0.23) |
| Supplementary motor area (left) | 24 (3.38) | 22 (3.09) | 7 (0.98) |
| Amygdala (left) | 8 (10.53) | 6 (7.89) | 6 (7.89) |
| Inferior frontal gyrus (right) | 125 (10.48) | 160 (13.41) | 6 (0.50) |
| Fusiform gyrus (right) | 10 (1.12) | 65 (7.30) | 5 (0.56) |
| Middle frontal gyrus (left) | 142 (6.59) | 252 (11.69) | 5 (0.23) |
| Calcarine sulcus (right) | 109 (15.55) | 74 (10.56) | 4 (0.57) |
| Caudate nucleus (left) | 42 (11.54) | 5 (1.37) | 4 (1.10) |
| Lingual gyrus (right) | 139 (16.22) | 32 (3.73) | 4 (0.47) |
| Angular gyrus (right) | 13 (2.02) | 22 (3.42) | 3 (0.47) |
| Parahippocampal gyrus (left) | 34 (10.12) | 38 (11.31) | 2 (0.60) |
| Superior temporal pole (right) | 63 (11.71) | 5 (0.93) | 1 (0.19) |
| Area triangularis (right) | 89 (10.29) | 23 (2.66) | – |
| Caudate nucleus (right) | 1 (0.27) | 42 (11.29) | – |
| Cuneus (left) | – | 23 (4.09) | – |
| Cuneus (right) | 2 (0.40) | 71 (14.12) | – |
| Fusiform gyrus (left) | 72 (9.13) | 48 (6.08) | – |
| Gyrus rectus (left) | – | 5 (1.51) | – |
| Gyrus rectus (right) | – | 1 (0.37) | – |
| Hippocampus (right) | 3 (0.94) | 16 (5.02) | – |
| Insula (left) | – | 230 (33.82) | – |
| Insula (right) | 7 (1.07) | – | – |
| Lingual gyrus (left) | 10 (1.27) | 343 (43.69) | – |
| Middle frontal gyrus (right) | 130 (5.66) | 167 (7.27) | – |
| Middle temporal pole (left) | – | 62 (21.23) | – |
| Occipital (right) | 21 (1.30) | 220 (13.58) | – |
| Olfactory cortex (left) | – | 6 (6.00) | – |
| Olfactory cortex (right) | – | 11 (9.48) | – |
| Paracentral lobule (left) | 9 (1.96) | 67 (14.60) | – |
| Paracentral lobule (right) | 2 (0.70) | 4 (1.40) | – |
| Postcentral gyrus (left) | 48 (3.63) | 81 (6.12) | – |
| Postcentral gyrus (right) | – | 35 (2.55) | – |
| Precentral gyrus (left) | 8 (0.71) | 17 (1.51) | – |
| Precentral gyrus (right) | – | 124 (11.10) | – |
| Rolandic operculum (left) | – | 52 (15.57) | – |
| Rolandic operculum (right) | 10 (2.16) | – | – |
| Superior frontal gyrus (left) | 161 (5.09) | 398 (12.57) | – |
| Superior temporal pole (left) | – | 12 (2.43) | – |
| Supplementary motor area (right) | 114 (14.21) | 1 (0.12) | – |
| Supramarginal gyrus (right) | 10 (1.48) | – | – |
| Temporal gyrus (left) | 256 (6.99) | 205 (5.60) | – |
| Transverse temporal gyri (left) | – | 24 (28.92) | – |
| Transverse temporal gyri (right) | 1 (1.16) | – | – |
The last column (fourth) contains the size of the common area for both classifications. The size is given in mm3 and as the percentage of the total volume of the anatomical region.
Figure 3Percentage of ASC individuals correctly classified as ASC by a classifier trained with controls and ASC data (abscissa) vs. the percentage of siblings classified as ASC by the same trained classifier (ordinate axis). Regions near to the blue line provide approximately the same accuracy in both classifications. This suggests they have similar patterns and corroborates the suggestion that they are endophenotypes of ASC.
Figure 4Histograms of the number of regions for which the SVM classifier achieved significant accuracy rates when classifying controls vs. ASC participants (left) and controls vs. siblings of ASC participants (right).