Literature DB >> 24920332

REPRESSOR OF SILENCING5 Encodes a Member of the Small Heat Shock Protein Family and Is Required for DNA Demethylation in Arabidopsis.

Yusheng Zhao1, Shaojun Xie2, Xiaojie Li1, Chunlei Wang1, Zhongzhou Chen2, Jinsheng Lai3, Zhizhong Gong4.   

Abstract

In Arabidopsis thaliana, active DNA demethylation is initiated by the DNA glycosylase REPRESSOR OF SILENCING1 (ROS1) and its paralogs DEMETER, DEMETER-LIKE2 (DML2), and DML3. How these demethylation enzymes are regulated, however, is poorly understood. Here, using a transgenic Arabidopsis line harboring the stress-inducible RESPONSIVE TO DEHYDRATION29A (RD29A) promoter-LUCIFERASE (LUC) reporter gene and the cauliflower mosaic virus 35S promoter (35S)-NEOMYCIN PHOSPHOTRANSFERASE II (NPTII) antibiotic resistance marker gene, we characterize a ROS locus, ROS5, that encodes a protein in the small heat shock protein family. ROS5 mutations lead to the silencing of the 35S-NPTII transgene due to DNA hypermethylation but do not affect the expression of the RD29A-LUC transgene. ROS5 physically interacts with the histone acetyltransferase ROS4/INCREASED DNA METHYLATION1 (IDM1) and is required to prevent the DNA hypermethylation of some genes that are also regulated by ROS1 and IDM1. We propose that ROS5 regulates DNA demethylation by interacting with IDM1, thereby creating a chromatin environment that facilitates the binding of ROS1 to erase DNA methylation.
© 2014 American Society of Plant Biologists. All rights reserved.

Entities:  

Year:  2014        PMID: 24920332      PMCID: PMC4114958          DOI: 10.1105/tpc.114.126730

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  46 in total

Review 1.  Regulation of the heat-shock response.

Authors:  F Schöffl; R Prändl; A Reindl
Journal:  Plant Physiol       Date:  1998-08       Impact factor: 8.340

2.  Three-dimensional structure of α-crystallin domain dimers of human small heat shock proteins HSPB1 and HSPB6.

Authors:  E V Baranova; S D Weeks; S Beelen; O V Bukach; N B Gusev; S V Strelkov
Journal:  J Mol Biol       Date:  2011-05-30       Impact factor: 5.469

3.  Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation.

Authors:  A M Lindroth; X Cao; J P Jackson; D Zilberman; C M McCallum; S Henikoff; S E Jacobsen
Journal:  Science       Date:  2001-05-10       Impact factor: 47.728

4.  DNA replication factor C1 mediates genomic stability and transcriptional gene silencing in Arabidopsis.

Authors:  Qian Liu; Junguo Wang; Daisuke Miki; Ran Xia; Wenxiang Yu; Junna He; Zhimin Zheng; Jian-Kang Zhu; Zhizhong Gong
Journal:  Plant Cell       Date:  2010-07-16       Impact factor: 11.277

5.  The DNA repair protein XRCC1 functions in the plant DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.

Authors:  María Isabel Martínez-Macías; Dolores Córdoba-Cañero; Rafael R Ariza; Teresa Roldán-Arjona
Journal:  J Biol Chem       Date:  2013-01-11       Impact factor: 5.157

6.  Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana.

Authors:  Hidetoshi Saze; Akiko Shiraishi; Asuka Miura; Tetsuji Kakutani
Journal:  Science       Date:  2008-01-25       Impact factor: 47.728

7.  Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Authors:  J A Jeddeloh; T L Stokes; E J Richards
Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

8.  ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase.

Authors:  Zhizhong Gong; Teresa Morales-Ruiz; Rafael R Ariza; Teresa Roldán-Arjona; Lisa David; Jian Kang Zhu
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

9.  Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression.

Authors:  Xin Li; Jingde Zhu; Fengyi Hu; Song Ge; Mingzhi Ye; Hui Xiang; Guojie Zhang; Xiaoming Zheng; Hongyu Zhang; Shilai Zhang; Qiong Li; Ruibang Luo; Chang Yu; Jian Yu; Jingfeng Sun; Xiaoyu Zou; Xiaofeng Cao; Xianfa Xie; Jun Wang; Wen Wang
Journal:  BMC Genomics       Date:  2012-07-02       Impact factor: 3.969

10.  Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

Authors:  Felix Krueger; Simon R Andrews
Journal:  Bioinformatics       Date:  2011-04-14       Impact factor: 6.937

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  21 in total

1.  Histone acetylation recruits the SWR1 complex to regulate active DNA demethylation in Arabidopsis.

Authors:  Wen-Feng Nie; Mingguang Lei; Mingxuan Zhang; Kai Tang; Huan Huang; Cuijun Zhang; Daisuke Miki; Pan Liu; Yu Yang; Xingang Wang; Heng Zhang; Zhaobo Lang; Na Liu; Xuechen Xu; Ramesh Yelagandula; Huiming Zhang; Zhidan Wang; Xiaoqiang Chai; Andrea Andreucci; Jing-Quan Yu; Frederic Berger; Rosa Lozano-Duran; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-30       Impact factor: 11.205

2.  Characterization and fine mapping of Arabidopsis RLL3, a locus required for DNA demethylation pathway.

Authors:  Wei Miao; Jie Dai; Yumei La; Chong Lu; Jianzhen Zhang; Xinyue Hong; Shaoxia Zhou; Qianqian Wang; Xiangyu Wang; Qi Rui; Feng Tan; Honggui La
Journal:  Mol Genet Genomics       Date:  2019-09-05       Impact factor: 3.291

3.  The methyl-CpG-binding protein MBD7 facilitates active DNA demethylation to limit DNA hyper-methylation and transcriptional gene silencing.

Authors:  Zhaobo Lang; Mingguang Lei; Xingang Wang; Kai Tang; Daisuke Miki; Huiming Zhang; Satendra K Mangrauthia; Wenshan Liu; Wenfeng Nie; Guojie Ma; Jun Yan; Cheng-Guo Duan; Chuan-Chih Hsu; Chunlei Wang; W Andy Tao; Zhizhong Gong; Jian-Kang Zhu
Journal:  Mol Cell       Date:  2015-02-12       Impact factor: 17.970

4.  METHIONINE ADENOSYLTRANSFERASE4 Mediates DNA and Histone Methylation.

Authors:  Jingjing Meng; Lishuan Wang; Jingyi Wang; Xiaowen Zhao; Jinkui Cheng; Wenxiang Yu; Dan Jin; Qing Li; Zhizhong Gong
Journal:  Plant Physiol       Date:  2018-03-23       Impact factor: 8.340

5.  Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis.

Authors:  Jixiang Zhang; Shaojun Xie; Jian-Kang Zhu; Zhizhong Gong
Journal:  Plant J       Date:  2016-08-05       Impact factor: 6.417

6.  Methyl-CpG-binding domain protein MBD7 is required for active DNA demethylation in Arabidopsis.

Authors:  Chunlei Wang; Xiaomei Dong; Dan Jin; Yusheng Zhao; Shaojun Xie; Xiaojie Li; Xinjian He; Zhaobo Lang; Jinsheng Lai; Jian-Kang Zhu; Zhizhong Gong
Journal:  Plant Physiol       Date:  2015-01-15       Impact factor: 8.340

7.  The MBD7 complex promotes expression of methylated transgenes without significantly altering their methylation status.

Authors:  Dongming Li; Ana Marie S Palanca; So Youn Won; Lei Gao; Ying Feng; Ajay A Vashisht; Li Liu; Yuanyuan Zhao; Xigang Liu; Xiuyun Wu; Shaofang Li; Brandon Le; Yun Ju Kim; Guodong Yang; Shengben Li; Jinyuan Liu; James A Wohlschlegel; Hongwei Guo; Beixin Mo; Xuemei Chen; Julie A Law
Journal:  Elife       Date:  2017-04-28       Impact factor: 8.140

8.  Peroxisomal β-oxidation regulates histone acetylation and DNA methylation in Arabidopsis.

Authors:  Lishuan Wang; Chunlei Wang; Xinye Liu; Jinkui Cheng; Shaofang Li; Jian-Kang Zhu; Zhizhong Gong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-07       Impact factor: 11.205

9.  The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation.

Authors:  Jixiang Zhang; Shaojun Xie; Jinkui Cheng; Jinsheng Lai; Jian-Kang Zhu; Zhizhong Gong
Journal:  Plant Physiol       Date:  2016-04-25       Impact factor: 8.340

10.  Involvement of MEM1 in DNA demethylation in Arabidopsis.

Authors:  Yanke Lu; Jie Dai; Liu Yang; Yumei La; Shaoxia Zhou; Sheng Qiang; Qianqian Wang; Feng Tan; Yufeng Wu; Weiwen Kong; Honggui La
Journal:  Plant Mol Biol       Date:  2020-01-04       Impact factor: 4.076

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