| Literature DB >> 24911500 |
Michal Galdzicki1, Kevin P Clancy2, Ernst Oberortner3, Matthew Pocock4, Jacqueline Y Quinn5, Cesar A Rodriguez5, Nicholas Roehner6, Mandy L Wilson7, Laura Adam7, J Christopher Anderson8, Bryan A Bartley9, Jacob Beal10, Deepak Chandran5, Joanna Chen11, Douglas Densmore3, Drew Endy12, Raik Grünberg13, Jennifer Hallinan4, Nathan J Hillson11, Jeffrey D Johnson14, Allan Kuchinsky15, Matthew Lux7, Goksel Misirli4, Jean Peccoud7, Hector A Plahar11, Evren Sirin16, Guy-Bart Stan17, Alan Villalobos18, Anil Wipat4, John H Gennari1, Chris J Myers19, Herbert M Sauro9.
Abstract
The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow.Mesh:
Year: 2014 PMID: 24911500 DOI: 10.1038/nbt.2891
Source DB: PubMed Journal: Nat Biotechnol ISSN: 1087-0156 Impact factor: 54.908