Literature DB >> 29511798

Advanced genetic tools enable synthetic biology in the oleaginous microalgae Nannochloropsis sp.

Eric Poliner1,2, Eva M Farré3, Christoph Benning4,5,6.   

Abstract

Nannochloropsis is a genus of fast-growing microalgae that are regularly used for biotechnology applications. Nannochloropsis species have a high triacylglycerol content and their polar lipids are rich in the omega-3 long-chain polyunsaturated fatty acid, eicosapentaenoic acid. Placed in the heterokont lineage, the Nannochloropsis genus has a complex evolutionary history. Genome sequences are available for several species, and a number of transcriptomic datasets have been produced, making this genus a facile model for comparative genomics. There is a growing interest in Nannochloropsis species as models for the study of microalga lipid metabolism and as a chassis for synthetic biology. Recently, techniques for gene stacking, and targeted gene disruption and repression in the Nannochloropsis genus have been developed. These tools enable gene-specific, mechanistic studies and have already allowed the engineering of improved Nannochloropsis strains with superior growth, or greater bioproduction.

Entities:  

Keywords:  Algal biotechnology; Episomes; Gene stacking; Marker-free engineering; Nannochloropsis; Synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29511798     DOI: 10.1007/s00299-018-2270-0

Source DB:  PubMed          Journal:  Plant Cell Rep        ISSN: 0721-7714            Impact factor:   4.570


  113 in total

Review 1.  DNA binding sites: representation and discovery.

Authors:  G D Stormo
Journal:  Bioinformatics       Date:  2000-01       Impact factor: 6.937

2.  Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity.

Authors:  F Ann Ran; Patrick D Hsu; Chie-Yu Lin; Jonathan S Gootenberg; Silvana Konermann; Alexandro E Trevino; David A Scott; Azusa Inoue; Shogo Matoba; Yi Zhang; Feng Zhang
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

3.  Light Remodels Lipid Biosynthesis in Nannochloropsis gaditana by Modulating Carbon Partitioning between Organelles.

Authors:  Alessandro Alboresi; Giorgio Perin; Nicola Vitulo; Gianfranco Diretto; Maryse Block; Juliette Jouhet; Andrea Meneghesso; Giorgio Valle; Giovanni Giuliano; Eric Maréchal; Tomas Morosinotto
Journal:  Plant Physiol       Date:  2016-06-20       Impact factor: 8.340

4.  High-efficiency homologous recombination in the oil-producing alga Nannochloropsis sp.

Authors:  Oliver Kilian; Christina S E Benemann; Krishna K Niyogi; Bertrand Vick
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-28       Impact factor: 11.205

5.  Tandem inverted repeat system for selection of effective transgenic RNAi strains in Chlamydomonas.

Authors:  Jennifer Rohr; Nandita Sarkar; Susan Balenger; Byeong-ryool Jeong; Heriberto Cerutti
Journal:  Plant J       Date:  2004-11       Impact factor: 6.417

6.  Stable nuclear transformation of Chlamydomonas using the Chlamydomonas gene for nitrate reductase.

Authors:  K L Kindle; R A Schnell; E Fernández; P A Lefebvre
Journal:  J Cell Biol       Date:  1989-12       Impact factor: 10.539

7.  A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production.

Authors:  Eric Poliner; Jane A Pulman; Krzysztof Zienkiewicz; Kevin Childs; Christoph Benning; Eva M Farré
Journal:  Plant Biotechnol J       Date:  2017-07-13       Impact factor: 9.803

8.  Nannochloropsis, a rich source of diacylglycerol acyltransferases for engineering of triacylglycerol content in different hosts.

Authors:  Krzysztof Zienkiewicz; Agnieszka Zienkiewicz; Eric Poliner; Zhi-Yan Du; Katharina Vollheyde; Cornelia Herrfurth; Sofia Marmon; Eva M Farré; Ivo Feussner; Christoph Benning
Journal:  Biotechnol Biofuels       Date:  2017-01-03       Impact factor: 6.040

9.  An episomal vector-based CRISPR/Cas9 system for highly efficient gene knockout in human pluripotent stem cells.

Authors:  Yifang Xie; Daqi Wang; Feng Lan; Gang Wei; Ting Ni; Renjie Chai; Dong Liu; Shijun Hu; Mingqing Li; Dajin Li; Hongyan Wang; Yongming Wang
Journal:  Sci Rep       Date:  2017-05-24       Impact factor: 4.379

10.  Gene silencing in the marine diatom Phaeodactylum tricornutum.

Authors:  Valentina De Riso; Raffaella Raniello; Florian Maumus; Alessandra Rogato; Chris Bowler; Angela Falciatore
Journal:  Nucleic Acids Res       Date:  2009-05-31       Impact factor: 16.971

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  17 in total

Review 1.  The Synthetic Biology Toolkit for Photosynthetic Microorganisms.

Authors:  Konstantinos Vavitsas; Pierre Crozet; Marcos Hamborg Vinde; Fiona Davies; Stéphane D Lemaire; Claudia E Vickers
Journal:  Plant Physiol       Date:  2019-07-01       Impact factor: 8.340

2.  Plant metabolic engineering in the synthetic biology era: plant chassis selection.

Authors:  C Neal Stewart; Nicola Patron; Andrew D Hanson; Joseph M Jez
Journal:  Plant Cell Rep       Date:  2018-09-08       Impact factor: 4.570

3.  The Microalga Nannochloropsis during Transition from Quiescence to Autotrophy in Response to Nitrogen Availability.

Authors:  Agnieszka Zienkiewicz; Krzysztof Zienkiewicz; Eric Poliner; Jane A Pulman; Zhi-Yan Du; Giovanni Stefano; Chia-Hong Tsai; Patrick Horn; Ivo Feussner; Eva M Farre; Kevin L Childs; Federica Brandizzi; Christoph Benning
Journal:  Plant Physiol       Date:  2019-11-18       Impact factor: 8.340

Review 4.  Eukaryotic microalgae as hosts for light-driven heterologous isoprenoid production.

Authors:  Kyle J Lauersen
Journal:  Planta       Date:  2018-11-22       Impact factor: 4.116

5.  Application of GeneCloudOmics: Transcriptomic Data Analytics for Synthetic Biology.

Authors:  Mohamed Helmy; Kumar Selvarajoo
Journal:  Methods Mol Biol       Date:  2023

6.  Aureochromes maintain polyunsaturated fatty acid content in Nannochloropsis oceanica.

Authors:  Eric Poliner; Andrea W U Busch; Linsey Newton; Young Uk Kim; Rachel Clark; Sofía C Gonzalez-Martinez; Byeong-Ryool Jeong; Beronda L Montgomery; Eva M Farré
Journal:  Plant Physiol       Date:  2022-06-01       Impact factor: 8.005

7.  Photosynthetic Carbon Partitioning and Metabolic Regulation in Response to Very-Low and High CO2 in Microchloropsis gaditana NIES 2587.

Authors:  Mukul Suresh Kareya; Iqra Mariam; Kashif Mohd Shaikh; Asha Arumugam Nesamma; Pannaga Pavan Jutur
Journal:  Front Plant Sci       Date:  2020-07-03       Impact factor: 5.753

8.  Integration of proteome and transcriptome refines key molecular processes underlying oil production in Nannochloropsis oceanica.

Authors:  Wuxin You; Li Wei; Yanhai Gong; Mohamed El Hajjami; Jian Xu; Ansgar Poetsch
Journal:  Biotechnol Biofuels       Date:  2020-06-18       Impact factor: 6.040

9.  Transcriptomic and proteomic responses to very low CO2 suggest multiple carbon concentrating mechanisms in Nannochloropsis oceanica.

Authors:  Li Wei; Mohamed El Hajjami; Chen Shen; Wuxin You; Yandu Lu; Jing Li; Xiaoyan Jing; Qiang Hu; Wenxu Zhou; Ansgar Poetsch; Jian Xu
Journal:  Biotechnol Biofuels       Date:  2019-06-28       Impact factor: 6.040

10.  Characterization of the Bubblegum acyl-CoA synthetase of Microchloropsis gaditana.

Authors:  Elodie Billey; Leonardo Magneschi; Sébastien Leterme; Mariette Bedhomme; Amélie Andres-Robin; Laurent Poulet; Morgane Michaud; Giovanni Finazzi; Renaud Dumas; Serge Crouzy; Frédéric Laueffer; Laurent Fourage; Fabrice Rébeillé; Alberto Amato; Séverine Collin; Juliette Jouhet; Eric Maréchal
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

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