Literature DB >> 28591125

Open-source, community-driven microfluidics with Metafluidics.

David S Kong1, Todd A Thorsen1, Jonathan Babb2, Scott T Wick1, Jeremy J Gam2, Ron Weiss2,3, Peter A Carr1.   

Abstract

Microfluidic devices have the potential to automate and miniaturize biological experiments, but open-source sharing of device designs has lagged behind sharing of other resources such as software. Synthetic biologists have used microfluidics for DNA assembly, cell-free expression, and cell culture, but a combination of expense, device complexity, and reliance on custom set-ups hampers their widespread adoption. We present Metafluidics, an open-source, community-driven repository that hosts digital design files, assembly specifications, and open-source software to enable users to build, configure, and operate a microfluidic device. We use Metafluidics to share designs and fabrication instructions for both a microfluidic ring-mixer device and a 32-channel tabletop microfluidic controller. This device and controller are applied to build genetic circuits using standard DNA assembly methods including ligation, Gateway, Gibson, and Golden Gate. Metafluidics is intended to enable a broad community of engineers, DIY enthusiasts, and other nontraditional participants with limited fabrication skills to contribute to microfluidic research.

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Year:  2017        PMID: 28591125     DOI: 10.1038/nbt.3873

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  31 in total

1.  Dynamic pattern formation in a vesicle-generating microfluidic device.

Authors:  T Thorsen; R W Roberts; F H Arnold; S R Quake
Journal:  Phys Rev Lett       Date:  2001-04-30       Impact factor: 9.161

2.  Chaotic mixer for microchannels.

Authors:  Abraham D Stroock; Stephan K W Dertinger; Armand Ajdari; Igor Mezic; Howard A Stone; George M Whitesides
Journal:  Science       Date:  2002-01-25       Impact factor: 47.728

3.  Microfluidic large-scale integration.

Authors:  Todd Thorsen; Sebastian J Maerkl; Stephen R Quake
Journal:  Science       Date:  2002-09-26       Impact factor: 47.728

Review 4.  3D printed microfluidics for biological applications.

Authors:  Chee Meng Benjamin Ho; Sum Huan Ng; King Ho Holden Li; Yong-Jin Yoon
Journal:  Lab Chip       Date:  2015       Impact factor: 6.799

5.  Synthesis and cell-free cloning of DNA libraries using programmable microfluidics.

Authors:  Tuval Ben Yehezkel; Arnaud Rival; Ofir Raz; Rafael Cohen; Zipora Marx; Miguel Camara; Jean-Frédéric Dubern; Birgit Koch; Stephan Heeb; Natalio Krasnogor; Cyril Delattre; Ehud Shapiro
Journal:  Nucleic Acids Res       Date:  2015-10-19       Impact factor: 16.971

6.  A microfluidic oligonucleotide synthesizer.

Authors:  Cheng-Chung Lee; Thomas M Snyder; Stephen R Quake
Journal:  Nucleic Acids Res       Date:  2010-02-21       Impact factor: 16.971

Review 7.  Poly(dimethylsiloxane) as a material for fabricating microfluidic devices.

Authors:  J Cooper McDonald; George M Whitesides
Journal:  Acc Chem Res       Date:  2002-07       Impact factor: 22.384

8.  Design, implementation and practice of JBEI-ICE: an open source biological part registry platform and tools.

Authors:  Timothy S Ham; Zinovii Dmytriv; Hector Plahar; Joanna Chen; Nathan J Hillson; Jay D Keasling
Journal:  Nucleic Acids Res       Date:  2012-06-19       Impact factor: 16.971

9.  Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Authors:  Ebrahim Afshinnekoo; Cem Meydan; Shanin Chowdhury; Dyala Jaroudi; Collin Boyer; Nick Bernstein; Julia M Maritz; Darryl Reeves; Jorge Gandara; Sagar Chhangawala; Sofia Ahsanuddin; Amber Simmons; Timothy Nessel; Bharathi Sundaresh; Elizabeth Pereira; Ellen Jorgensen; Sergios-Orestis Kolokotronis; Nell Kirchberger; Isaac Garcia; David Gandara; Sean Dhanraj; Tanzina Nawrin; Yogesh Saletore; Noah Alexander; Priyanka Vijay; Elizabeth M Hénaff; Paul Zumbo; Michael Walsh; Gregory D O'Mullan; Scott Tighe; Joel T Dudley; Anya Dunaif; Sean Ennis; Eoghan O'Halloran; Tiago R Magalhaes; Braden Boone; Angela L Jones; Theodore R Muth; Katie Schneider Paolantonio; Elizabeth Alter; Eric E Schadt; Jeanne Garbarino; Robert J Prill; Jane M Carlton; Shawn Levy; Christopher E Mason
Journal:  Cell Syst       Date:  2015-03-03       Impact factor: 10.304

10.  3D Printed Multimaterial Microfluidic Valve.

Authors:  Steven J Keating; Maria Isabella Gariboldi; William G Patrick; Sunanda Sharma; David S Kong; Neri Oxman
Journal:  PLoS One       Date:  2016-08-15       Impact factor: 3.240

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  18 in total

Review 1.  "Learning on a chip:" Microfluidics for formal and informal science education.

Authors:  Darius G Rackus; Ingmar H Riedel-Kruse; Nicole Pamme
Journal:  Biomicrofluidics       Date:  2019-07-09       Impact factor: 2.800

2.  Three-dimensional Printing of Thermoplastic Materials to Create Automated Syringe Pumps with Feedback Control for Microfluidic Applications.

Authors:  Ming-Cheng Chen; John R Lake; Keith C Heyde; Warren C Ruder
Journal:  J Vis Exp       Date:  2018-08-30       Impact factor: 1.355

3.  PERSIA for Direct Fluorescence Measurements of Transcription, Translation, and Enzyme Activity in Cell-Free Systems.

Authors:  Scott Wick; David I Walsh; Johanna Bobrow; Kimberly Hamad-Schifferli; David S Kong; Todd Thorsen; Keri Mroszczyk; Peter A Carr
Journal:  ACS Synth Biol       Date:  2019-04-30       Impact factor: 5.110

4.  Putting microfluidics in other people's hands.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2018-02-28       Impact factor: 28.547

5.  Rapid prototyping of cell culture microdevices using parylene-coated 3D prints.

Authors:  Brian J O'Grady; Michael D Geuy; Hyosung Kim; Kylie M Balotin; Everett R Allchin; David C Florian; Neelansh N Bute; Taylor E Scott; Gregory B Lowen; Colin M Fricker; Matthew L Fitzgerald; Scott A Guelcher; John P Wikswo; Leon M Bellan; Ethan S Lippmann
Journal:  Lab Chip       Date:  2021-12-07       Impact factor: 6.799

6.  An Open-Source, Programmable Pneumatic Setup for Operation and Automated Control of Single- and Multi-Layer Microfluidic Devices.

Authors:  Kara Brower; Robert Puccinelli; Craig J Markin; Tyler C Shimko; Scott A Longwell; Bianca Cruz; Rafael Gomez-Sjoberg; Polly M Fordyce
Journal:  HardwareX       Date:  2017-10-31

7.  Open software platform for automated analysis of paper-based microfluidic devices.

Authors:  Rayleigh W Parker; Daniel J Wilson; Charles R Mace
Journal:  Sci Rep       Date:  2020-07-09       Impact factor: 4.379

8.  Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER.

Authors:  Brandon G Wong; Christopher P Mancuso; Szilvia Kiriakov; Caleb J Bashor; Ahmad S Khalil
Journal:  Nat Biotechnol       Date:  2018-06-11       Impact factor: 54.908

9.  3DμF - Interactive Design Environment for Continuous Flow Microfluidic Devices.

Authors:  Radhakrishna Sanka; Joshua Lippai; Dinithi Samarasekera; Sarah Nemsick; Douglas Densmore
Journal:  Sci Rep       Date:  2019-06-24       Impact factor: 4.379

10.  Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.

Authors:  William Stephenson; Laura T Donlin; Andrew Butler; Cristina Rozo; Bernadette Bracken; Ali Rashidfarrokhi; Susan M Goodman; Lionel B Ivashkiv; Vivian P Bykerk; Dana E Orange; Robert B Darnell; Harold P Swerdlow; Rahul Satija
Journal:  Nat Commun       Date:  2018-02-23       Impact factor: 14.919

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