Literature DB >> 24907989

Improved initial guess for minimum energy path calculations.

Søren Smidstrup1, Andreas Pedersen2, Kurt Stokbro1, Hannes Jónsson2.   

Abstract

A method is presented for generating a good initial guess of a transition path between given initial and final states of a system without evaluation of the energy. An objective function surface is constructed using an interpolation of pairwise distances at each discretization point along the path and the nudged elastic band method then used to find an optimal path on this image dependent pair potential (IDPP) surface. This provides an initial path for the more computationally intensive calculations of a minimum energy path on an energy surface obtained, for example, by ab initio or density functional theory. The optimal path on the IDPP surface is significantly closer to a minimum energy path than a linear interpolation of the Cartesian coordinates and, therefore, reduces the number of iterations needed to reach convergence and averts divergence in the electronic structure calculations when atoms are brought too close to each other in the initial path. The method is illustrated with three examples: (1) rotation of a methyl group in an ethane molecule, (2) an exchange of atoms in an island on a crystal surface, and (3) an exchange of two Si-atoms in amorphous silicon. In all three cases, the computational effort in finding the minimum energy path with DFT was reduced by a factor ranging from 50% to an order of magnitude by using an IDPP path as the initial path. The time required for parallel computations was reduced even more because of load imbalance when linear interpolation of Cartesian coordinates was used.

Entities:  

Year:  2014        PMID: 24907989     DOI: 10.1063/1.4878664

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  14 in total

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Journal:  Nat Commun       Date:  2021-04-19       Impact factor: 14.919

6.  Toward Targeted Kinetic Trapping of Organic-Inorganic Interfaces: A Computational Case Study.

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7.  Multi-Bandgap Monolithic Metal Nanowire Percolation Network Sensor Integration by Reversible Selective Laser-Induced Redox.

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Journal:  Nanomicro Lett       Date:  2022-01-25

8.  Ge nanowires on top of a Ge substrate for applications in anodes of Li and Na ion batteries: a first-principles study.

Authors:  Shaoshuai Gao; Tingyu Zhao; Dongxu Wang; Jian Huang; Youlin Xiang; Yingjian Yu
Journal:  RSC Adv       Date:  2022-03-23       Impact factor: 3.361

9.  Elucidating the Mechanism of Ambient-Temperature Aldol Condensation of Acetaldehyde on Ceria.

Authors:  Suman Bhasker-Ranganath; Md Saeedur Rahman; Chuanlin Zhao; Florencia Calaza; Zili Wu; Ye Xu
Journal:  ACS Catal       Date:  2021-06-30       Impact factor: 13.084

10.  Influence of atomic site-specific strain on catalytic activity of supported nanoparticles.

Authors:  Torben Nilsson Pingel; Mikkel Jørgensen; Andrew B Yankovich; Henrik Grönbeck; Eva Olsson
Journal:  Nat Commun       Date:  2018-07-13       Impact factor: 14.919

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