| Literature DB >> 24904827 |
Jing-Tao Huang1, Jin Wang2, Vibhuti Srivastava2, Subrata Sen2, Song-Mei Liu1.
Abstract
MicroRNAs (miRNAs) directly and indirectly affect tumorigenesis. To be able to perform their myriad roles, miRNA machinery genes, such as Drosha, DGCR8, Dicer1, XPO5, TRBP, and AGO2, must generate precise miRNAs. These genes have specific expression patterns, protein-binding partners, and biochemical capabilities in different cancers. Our preliminary analysis of data from The Cancer Genome Atlas consortium on multiple types of cancer revealed significant alterations in these miRNA machinery genes. Here, we review their biological structures and functions with an eye toward understanding how they could serve as cancer biomarkers.Entities:
Keywords: alterations; biomarker; cancer; machinery genes; miRNA
Year: 2014 PMID: 24904827 PMCID: PMC4032885 DOI: 10.3389/fonc.2014.00113
Source DB: PubMed Journal: Front Oncol ISSN: 2234-943X Impact factor: 6.244
Figure 1Structure of microRNA machinery genes and miRNA biosynthesis.
The Cancer Genome Atlas consortium data on the incidence of genetic alterations.
| Gene symbol | Breast invasive carcinoma ( | Colon and rectum adenocarcinoma ( | Bladder urothelial carcinoma ( | Prostate adenocarcinoma ( | ||||
|---|---|---|---|---|---|---|---|---|
| % | % | % | % | |||||
| 40 | 8.6 | 153 | 78.5 | 10 | 8 | 6 | 7.3 | |
| 99 | 21.4 | 9 | 4.6 | 21 | 17 | 0 | 0 | |
| 42 | 9.1 | 11 | 5.6 | 29 | 23.2 | 8 | 9.8 | |
| 61 | 13.2 | 14 | 7.2 | 56 | 44.8 | 6 | 7.3 | |
| 30 | 6.5 | 15 | 7.7 | 12 | 9.6 | 11 | 13.4 | |
| 41 | 8.9 | 17 | 8.7 | 11 | 8.8 | 7 | 8.5 | |
| 15 | 3.2 | 6 | 3.1 | 12 | 9.6 | 8 | 9.8 | |
| 23 | 5 | 9 | 4.6 | 2 | 2.4 | |||
| 15 | 12 | 3 | 3.7 | |||||
| 31 | 6.7 | 6 | 3 | 8 | 6.4 | 4 | 4.9 | |
| 9 | 1.9 | |||||||
| 30 | 6.5 | 23 | 11.8 | 25 | 20 | 4 | 4.9 | |
| 33 | 7.1 | 20 | 10 | 18 | 14.4 | 8 | 9.8 | |
| 41 | 8.9 | 10 | 5 | 6 | 4.8 | 9 | 11 | |
| 96 | 20.7 | 13 | 6.7 | 21 | 16.8 | 4 | 4.9 | |
| 24 | 5.2 | 5 | 2.6 | 6 | 4.8 | 2 | 2.4 | |
| 64 | 13.8 | 22 | 11.3 | 33 | 26.4 | 11 | 13.4 | |
| 33 | 7.1 | 84 | 43.1 | 15 | 12 | 10 | 12.2 | |
| 1 | 0.2 | 3 | 1.5 | 4 | 3.2 | 0 | 0 | |
| 6 | 1.3 | 14 | 7.2 | 9 | 7.2 | 13 | 15.9 | |
| 65 | 14 | 10 | 5.1 | 14 | 11.2 | 7 | 8.5 | |
| 40 | 8.6 | 12 | 6.2 | 19 | 15 | 20 | 24.4 | |
| 12 | 2.6 | 2 | 1 | 19 | 15 | 20 | 24.4 | |
| 26 | 5.6 | 9 | 4.6 | 6 | 4.8 | 6 | 7 | |
| 6 | 1.3 | 7 | 3.6 | 1 | 0.8 | 1 | 1.2 | |
| 56 | 12.1 | 9 | 4.6 | 16 | 12.8 | 4 | 4.9 | |
| 36 | 7.8 | 16 | 8.2 | 7 | 5.6 | 11 | 13.4 | |
| 20 | 4.3 | 9 | 4.6 | 26 | 20.8 | 6 | 7.3 | |
| 54 | 11.7 | 20 | 10.3 | 13 | 10.4 | 30 | 36.6 | |
| 40 | 8.6 | 9 | 4.6 | 31 | 24.8 | 7 | 8.5 | |
| 51 | 11 | 20 | 10.3 | 32 | 25.6 | 17 | 20.7 | |
| 11 | 2.4 | 14 | 7.2 | 8 | 6.4 | 9 | 11 | |
| 186 | 40.2 | 108 | 55.4 | 70 | 56 | 18 | 22 | |
| 25 | 5.4 | 71 | 36.4 | 24 | 19.2 | 10 | 12.2 | |
| 1 | 1.2 | |||||||
| 4 | 0.9 | 7 | 4 | 18 | 14.4 | 6 | 7.3 | |
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Patterns of mutual exclusivity and co-occurrence of driver genes and microRNA machinery gene alteration in The Cancer Genome Atlas consortium data for the breast invasive carcinoma dataset (.
| Occurrence pattern | miRNA machinery gene | Driver gene | |
|---|---|---|---|
| 0.005 | |||
| 0.0019* | |||
| 0.03* | |||
| 0.0047 | |||
| 0.00 | |||
| 0.0002 | |||
| 0.0001 | |||
| 0.007 | |||
| 0.01 | |||
.
Expression levels of microRNA machinery genes in human tumors.
| miRNA machinery gene | Alteration type | Cancer type (reference) |
|---|---|---|
| Up-regulation | BCC ( | |
| Down-regulation | Ovarian cancer ( | |
| Up-regulation | BCC ( | |
| Up-regulation | Urothelial carcinoma ( | |
| Mutant | Non-small-cell lung cancer ( | |
| Up-regulation | SCC ( | |
| Down-regulation | Neuroblastoma ( | |
| Up-regulation | Prostate cancer ( | |
| Down-regulation | Lung adenocarcinoma ( | |
| Mutant | GC ( | |
| Up-regulation | Prostate cancer ( | |
| Mutant | CRC cells ( |
BCC, basal cell carcinoma; GC, gastric cancer; NPC, nasopharyngeal carcinoma; SCC, squamous cell carcinoma.