Literature DB >> 24880284

Time-, frequency-, and wavevector-resolved x-ray diffraction from single molecules.

Kochise Bennett1, Jason D Biggs1, Yu Zhang1, Konstantin E Dorfman1, Shaul Mukamel1.   

Abstract

Using a quantum electrodynamic framework, we calculate the off-resonant scattering of a broadband X-ray pulse from a sample initially prepared in an arbitrary superposition of electronic states. The signal consists of single-particle (incoherent) and two-particle (coherent) contributions that carry different particle form factors that involve different material transitions. Single-molecule experiments involving incoherent scattering are more influenced by inelastic processes compared to bulk measurements. The conditions under which the technique directly measures charge densities (and can be considered as diffraction) as opposed to correlation functions of the charge-density are specified. The results are illustrated with time- and wavevector-resolved signals from a single amino acid molecule (cysteine) following an impulsive excitation by a stimulated X-ray Raman process resonant with the sulfur K-edge. Our theory and simulations can guide future experimental studies on the structures of nano-particles and proteins.

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Year:  2014        PMID: 24880284      PMCID: PMC4039740          DOI: 10.1063/1.4878377

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  31 in total

Review 1.  Single-molecule X-ray diffraction.

Authors:  J Hajdu
Journal:  Curr Opin Struct Biol       Date:  2000-10       Impact factor: 6.809

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

Review 3.  Taking X-ray diffraction to the limit: macromolecular structures from femtosecond X-ray pulses and diffraction microscopy of cells with synchrotron radiation.

Authors:  Jianwei Miao; Henry N Chapman; Janos Kirz; David Sayre; Keith O Hodgson
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

4.  A long-range-corrected time-dependent density functional theory.

Authors:  Yoshihiro Tawada; Takao Tsuneda; Susumu Yanagisawa; Takeshi Yanai; Kimihiko Hirao
Journal:  J Chem Phys       Date:  2004-05-08       Impact factor: 3.488

5.  Coherent nonlinear optical studies of elementary processes in biological complexes: diagrammatic techniques based on the wave function versus the density matrix.

Authors:  Jason D Biggs; Judith A Voll; Shaul Mukamel
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2012-08-13       Impact factor: 4.226

6.  Imaging electronic quantum motion with light.

Authors:  Gopal Dixit; Oriol Vendrell; Robin Santra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-02       Impact factor: 11.205

7.  Accurate evaluation of valence and low-lying Rydberg states with standard time-dependent density functional theory.

Authors:  Ilaria Ciofini; Carlo Adamo
Journal:  J Phys Chem A       Date:  2007-06-02       Impact factor: 2.781

8.  Single-particle structure determination by correlations of snapshot X-ray diffraction patterns.

Authors:  D Starodub; A Aquila; S Bajt; M Barthelmess; A Barty; C Bostedt; J D Bozek; N Coppola; R B Doak; S W Epp; B Erk; L Foucar; L Gumprecht; C Y Hampton; A Hartmann; R Hartmann; P Holl; S Kassemeyer; N Kimmel; H Laksmono; M Liang; N D Loh; L Lomb; A V Martin; K Nass; C Reich; D Rolles; B Rudek; A Rudenko; J Schulz; R L Shoeman; R G Sierra; H Soltau; J Steinbrener; F Stellato; S Stern; G Weidenspointner; M Frank; J Ullrich; L Strüder; I Schlichting; H N Chapman; J C H Spence; M J Bogan
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

9.  Nonlinear light scattering in molecules triggered by an impulsive X-ray Raman process.

Authors:  Konstantin E Dorfman; Kochise Bennett; Yu Zhang; Shaul Mukamel
Journal:  Phys Rev A       Date:  2013-05-01       Impact factor: 3.140

10.  Entangled Valence Electron-Hole Dynamics Revealed by Stimulated Attosecond X-ray Raman Scattering.

Authors:  Daniel Healion; Yu Zhang; Jason D Biggs; Niranjan Govind; Shaul Mukamel
Journal:  J Phys Chem Lett       Date:  2012-08-08       Impact factor: 6.475

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  6 in total

1.  Unveiling the spatial distribution of molecular coherences at conical intersections by covariance X-ray diffraction signals.

Authors:  Stefano M Cavaletto; Daniel Keefer; Jérémy R Rouxel; Flavia Aleotti; Francesco Segatta; Marco Garavelli; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-01       Impact factor: 11.205

2.  Monitoring molecular nonadiabatic dynamics with femtosecond X-ray diffraction.

Authors:  Kochise Bennett; Markus Kowalewski; Jérémy R Rouxel; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-11       Impact factor: 11.205

3.  Imaging electron-density fluctuations by multidimensional X-ray photon-coincidence diffraction.

Authors:  Lyuzhou Ye; Jérémy R Rouxel; Daeheum Cho; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-24       Impact factor: 11.205

4.  Imaging of transition charge densities involving carbon core excitations by all X-ray sum-frequency generation.

Authors:  Daeheum Cho; Jérémy R Rouxel; Markus Kowalewski; JinYong Lee; Shaul Mukamel
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-05-20       Impact factor: 4.226

5.  Probing electronic and vibrational dynamics in molecules by time-resolved photoelectron, Auger-electron, and X-ray photon scattering spectroscopy.

Authors:  Kochise Bennett; Markus Kowalewski; Shaul Mukamel
Journal:  Faraday Discuss       Date:  2015-03-02       Impact factor: 4.008

6.  Monitoring nonadiabatic avoided crossing dynamics in molecules by ultrafast X-ray diffraction.

Authors:  Markus Kowalewski; Kochise Bennett; Shaul Mukamel
Journal:  Struct Dyn       Date:  2017-05-26       Impact factor: 2.920

  6 in total

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