Literature DB >> 24874572

KinomeXplorer: an integrated platform for kinome biology studies.

Heiko Horn1, Erwin M Schoof2, Jinho Kim2, Xavier Robin3, Martin L Miller4, Francesca Diella5, Anita Palma6, Gianni Cesareni7, Lars Juhl Jensen8, Rune Linding3.   

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Year:  2014        PMID： 24874572     DOI： 10.1038/nmeth.2968

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  10 in total

1.  Comprehensive analysis of kinase inhibitor selectivity.

Authors:  Mindy I Davis; Jeremy P Hunt; Sanna Herrgard; Pietro Ciceri; Lisa M Wodicka; Gabriel Pallares; Michael Hocker; Daniel K Treiber; Patrick P Zarrinkar
Journal:  Nat Biotechnol       Date:  2011-10-30       Impact factor: 54.908

2.  A systems model of signaling identifies a molecular basis set for cytokine-induced apoptosis.

Authors:  Kevin A Janes; John G Albeck; Suzanne Gaudet; Peter K Sorger; Douglas A Lauffenburger; Michael B Yaffe
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

Review 3.  Reading protein modifications with interaction domains.

Authors:  Bruce T Seet; Ivan Dikic; Ming-Ming Zhou; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

4.  Systematic discovery of in vivo phosphorylation networks.

Authors:  Rune Linding; Lars Juhl Jensen; Gerard J Ostheimer; Marcel A T M van Vugt; Claus Jørgensen; Ioana M Miron; Francesca Diella; Karen Colwill; Lorne Taylor; Kelly Elder; Pavel Metalnikov; Vivian Nguyen; Adrian Pasculescu; Jing Jin; Jin Gyoon Park; Leona D Samson; James R Woodgett; Robert B Russell; Peer Bork; Michael B Yaffe; Tony Pawson
Journal:  Cell       Date:  2007-06-14       Impact factor: 41.582

5.  Focus issue: From genomic mutations to oncogenic pathways.

Authors:  Nancy R Gough
Journal:  Sci Signal       Date:  2013-03-26       Impact factor: 8.192

6.  Linear motif atlas for phosphorylation-dependent signaling.

Authors:  Martin Lee Miller; Lars Juhl Jensen; Francesca Diella; Claus Jørgensen; Michele Tinti; Lei Li; Marilyn Hsiung; Sirlester A Parker; Jennifer Bordeaux; Thomas Sicheritz-Ponten; Marina Olhovsky; Adrian Pasculescu; Jes Alexander; Stefan Knapp; Nikolaj Blom; Peer Bork; Shawn Li; Gianni Cesareni; Tony Pawson; Benjamin E Turk; Michael B Yaffe; Søren Brunak; Rune Linding
Journal:  Sci Signal       Date:  2008-09-02       Impact factor: 8.192

7.  The scientific drunk and the lamppost: massive sequencing efforts in cancer discovery and treatment.

Authors:  Michael B Yaffe
Journal:  Sci Signal       Date:  2013-04-02       Impact factor: 8.192

8.  Phosphotyrosine signaling: evolving a new cellular communication system.

Authors:  Wendell A Lim; Tony Pawson
Journal:  Cell       Date:  2010-09-03       Impact factor: 41.582

9.  Phospho.ELM: a database of phosphorylation sites--update 2011.

Authors:  Holger Dinkel; Claudia Chica; Allegra Via; Cathryn M Gould; Lars J Jensen; Toby J Gibson; Francesca Diella
Journal:  Nucleic Acids Res       Date:  2010-11-09       Impact factor: 16.971

10.  Comprehensive assay of kinase catalytic activity reveals features of kinase inhibitor selectivity.

Authors:  Theonie Anastassiadis; Sean W Deacon; Karthik Devarajan; Haiching Ma; Jeffrey R Peterson
Journal:  Nat Biotechnol       Date:  2011-10-30       Impact factor: 54.908
  10 in total
  113 in total

1.  Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data.

Authors:  Pengyi Yang; Sean J Humphrey; David E James; Yee Hwa Yang; Raja Jothi
Journal:  Bioinformatics       Date:  2015-09-22       Impact factor: 6.937

2.  Streamlined Tandem Mass Tag (SL-TMT) Protocol: An Efficient Strategy for Quantitative (Phospho)proteome Profiling Using Tandem Mass Tag-Synchronous Precursor Selection-MS3.

Authors:  José Navarrete-Perea; Qing Yu; Steven P Gygi; Joao A Paulo
Journal:  J Proteome Res       Date:  2018-05-16       Impact factor: 4.466

3.  Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer.

Authors:  Zeynep Cansu Uretmen Kagiali; Erdem Sanal; Özge Karayel; Ayse Nur Polat; Özge Saatci; Pelin Gülizar Ersan; Kathrin Trappe; Bernhard Y Renard; Tamer T Önder; Nurcan Tuncbag; Özgür Şahin; Nurhan Ozlu
Journal:  Mol Cell Proteomics       Date:  2019-06-20       Impact factor: 5.911

4.  Machine Learning of Global Phosphoproteomic Profiles Enables Discrimination of Direct versus Indirect Kinase Substrates.

Authors:  Evgeny Kanshin; Sébastien Giguère; Cheng Jing; Mike Tyers; Pierre Thibault
Journal:  Mol Cell Proteomics       Date:  2017-03-06       Impact factor: 5.911

5.  Phosphoproteome and drug-response effects mediated by the three protein phosphatase 2A inhibitor proteins CIP2A, SET, and PME-1.

Authors:  Otto Kauko; Susumu Y Imanishi; Evgeny Kulesskiy; Laxman Yetukuri; Teemu Daniel Laajala; Mukund Sharma; Karolina Pavic; Anna Aakula; Christian Rupp; Mikael Jumppanen; Pekka Haapaniemi; Luyao Ruan; Bhagwan Yadav; Veronika Suni; Taru Varila; Garry L Corthals; Jüri Reimand; Krister Wennerberg; Tero Aittokallio; Jukka Westermarck
Journal:  J Biol Chem       Date:  2020-02-18       Impact factor: 5.157

6.  Multiomics Profiling Establishes the Polypharmacology of FDA-Approved CDK4/6 Inhibitors and the Potential for Differential Clinical Activity.

Authors:  Marc Hafner; Caitlin E Mills; Kartik Subramanian; Chen Chen; Mirra Chung; Sarah A Boswell; Robert A Everley; Changchang Liu; Charlotte S Walmsley; Dejan Juric; Peter K Sorger
Journal:  Cell Chem Biol       Date:  2019-06-06       Impact factor: 8.116

7.  A map of the phosphoproteomic alterations that occur after a bout of maximal-intensity contractions.

Authors:  Gregory K Potts; Rachel M McNally; Rocky Blanco; Jae-Sung You; Alexander S Hebert; Michael S Westphall; Joshua J Coon; Troy A Hornberger
Journal:  J Physiol       Date:  2017-07-04       Impact factor: 5.182

8.  Time-resolved Phosphoproteome Analysis of Paradoxical RAF Activation Reveals Novel Targets of ERK.

Authors:  Peter Kubiniok; Hugo Lavoie; Marc Therrien; Pierre Thibault
Journal:  Mol Cell Proteomics       Date:  2017-02-10       Impact factor: 5.911

9.  Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome.

Authors:  Fuyi Li; Chen Li; Tatiana T Marquez-Lago; André Leier; Tatsuya Akutsu; Anthony W Purcell; A Ian Smith; Trevor Lithgow; Roger J Daly; Jiangning Song; Kuo-Chen Chou
Journal:  Bioinformatics       Date:  2018-12-15       Impact factor: 6.937

10.  Mst1 Kinase Regulates the Actin-Bundling Protein L-Plastin To Promote T Cell Migration.

Authors:  Xiaolu Xu; Xinxin Wang; Elizabeth M Todd; Emily R Jaeger; Jennifer L Vella; Olivia L Mooren; Yunfeng Feng; Jiancheng Hu; John A Cooper; Sharon Celeste Morley; Yina H Huang
Journal:  J Immunol       Date:  2016-07-27       Impact factor: 5.422
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