Literature DB >> 24860392

(1S,2R,3S,6S,7R)-3,7,11,11-Tetra-methyl-6,7-epoxybi-cyclo-[5.4.0]undecane-2-ol.

Mohamed Loubidi1, Ahmed Benharref1, Lahcen El Ammari2, Mohamed Saadi2, Moha Berraho1.   

Abstract

The title compound, C15H26O2, was synthesized from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzo-cyclo-heptene), which was isolated from the Atlas cedar (cedrus atlantica). The mol-ecule is built up from a seven-membered ring to which a six- and a three-membered ring are fused. The seven- and six-membered rings each have a twist-boat conformation. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into zigzag chains running along the b-axis direction.

Entities:  

Year:  2014        PMID: 24860392      PMCID: PMC4011231          DOI: 10.1107/S1600536814008642

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to β-himachalene, see: El Haib et al.;(2011 ▶). For the reactivity of this sesquiterpene and its derivatives, see: El Jamili et al. (2002 ▶); Benharref et al. (2013 ▶); Ourhriss et al. (2013 ▶). For their potential anti­fungal activity against the phytopathogen Botrytis cinerea, see: Daoubi et al. (2004 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H26O2 M = 238.36 Monoclinic, a = 5.9617 (10) Å b = 12.068 (2) Å c = 9.5909 (15) Å β = 95.789 (8)° V = 686.48 (19) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 298 K 0.38 × 0.11 × 0.10 mm

Data collection

Bruker X8 APEX diffractometer 11541 measured reflections 3036 independent reflections 2698 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.131 S = 1.06 3036 reflections 162 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814008642/bt6976sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814008642/bt6976Isup2.hkl CCDC reference: 997713 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H26O2F(000) = 264
Mr = 238.36Dx = 1.153 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 3036 reflections
a = 5.9617 (10) Åθ = 2.7–27.1°
b = 12.068 (2) ŵ = 0.07 mm1
c = 9.5909 (15) ÅT = 298 K
β = 95.789 (8)°Needle, colourless
V = 686.48 (19) Å30.38 × 0.11 × 0.10 mm
Z = 2
Bruker X8 APEX diffractometer2698 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.031
Graphite monochromatorθmax = 27.1°, θmin = 2.7°
φ and ω scansh = −7→7
11541 measured reflectionsk = −15→15
3036 independent reflectionsl = −11→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0862P)2 + 0.0329P] where P = (Fo2 + 2Fc2)/3
3036 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 0.34 e Å3
1 restraintΔρmin = −0.16 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C20.0588 (3)0.50820 (14)0.02419 (18)0.0314 (4)
H20.17340.56110.00000.038*
C40.2591 (3)0.37310 (19)−0.11371 (19)0.0453 (5)
H4A0.32790.4210−0.17860.054*
H4B0.23990.3005−0.15670.054*
C90.3831 (5)0.3909 (3)0.4739 (2)0.0657 (7)
H9A0.52010.36060.52260.079*
H9B0.29420.42160.54390.079*
H11−0.153 (4)0.608 (2)−0.012 (3)0.051 (8)*
C10.1382 (3)0.45493 (13)0.16735 (17)0.0289 (3)
H10.00190.42720.20470.035*
C30.0279 (3)0.41938 (15)−0.09006 (19)0.0372 (4)
H3−0.06300.3592−0.05650.045*
C50.4180 (3)0.36301 (17)0.02114 (19)0.0395 (4)
H5A0.51320.29820.01620.047*
H5B0.51430.42790.03230.047*
C60.2821 (3)0.35300 (14)0.14433 (17)0.0304 (3)
C70.3361 (3)0.27224 (16)0.2586 (2)0.0412 (4)
C80.2506 (4)0.2968 (2)0.3985 (2)0.0545 (6)
H8A0.26370.23080.45640.065*
H8B0.09250.31700.38400.065*
C100.4472 (4)0.4851 (2)0.3774 (2)0.0531 (6)
H10A0.55720.45670.31860.064*
H10B0.52040.54310.43550.064*
C110.2506 (3)0.53852 (15)0.28073 (19)0.0372 (4)
C120.5456 (4)0.2016 (2)0.2643 (3)0.0612 (6)
H12A0.52040.13340.31190.092*
H12B0.66940.24050.31400.092*
H12C0.58030.18590.17080.092*
C13−0.0927 (4)0.4641 (2)−0.2266 (2)0.0575 (6)
H13A−0.01410.5281−0.25580.086*
H13B−0.24430.4842−0.21200.086*
H13C−0.09540.4080−0.29770.086*
C140.3584 (4)0.64005 (19)0.2140 (3)0.0574 (6)
H14A0.24290.68240.16110.086*
H14B0.46610.61500.15290.086*
H14C0.43290.68560.28650.086*
C150.0719 (4)0.5824 (2)0.3696 (3)0.0636 (7)
H15A0.14160.63000.44160.095*
H15B0.00050.52140.41180.095*
H15C−0.03910.62350.31130.095*
O1−0.1435 (2)0.56718 (13)0.04280 (17)0.0465 (4)
O20.1605 (2)0.24617 (10)0.14695 (15)0.0414 (3)
U11U22U33U12U13U23
C20.0338 (8)0.0274 (8)0.0338 (9)−0.0005 (7)0.0068 (6)0.0023 (7)
C40.0540 (11)0.0512 (12)0.0321 (9)0.0069 (9)0.0119 (8)−0.0066 (8)
C90.0770 (16)0.0825 (18)0.0347 (11)0.0019 (14)−0.0090 (10)0.0007 (12)
C10.0297 (7)0.0277 (7)0.0300 (8)−0.0025 (6)0.0062 (6)−0.0001 (6)
C30.0429 (10)0.0379 (9)0.0304 (9)−0.0010 (7)0.0020 (7)−0.0009 (7)
C50.0379 (9)0.0398 (9)0.0419 (10)0.0050 (8)0.0100 (7)−0.0051 (8)
C60.0321 (7)0.0265 (7)0.0317 (8)−0.0036 (6)−0.0003 (6)−0.0027 (7)
C70.0462 (10)0.0351 (10)0.0403 (10)−0.0033 (8)−0.0060 (8)0.0039 (8)
C80.0599 (13)0.0623 (14)0.0407 (11)−0.0036 (11)0.0022 (9)0.0197 (10)
C100.0487 (11)0.0572 (14)0.0514 (13)−0.0088 (9)−0.0045 (9)−0.0138 (10)
C110.0398 (9)0.0374 (9)0.0347 (9)−0.0056 (7)0.0052 (7)−0.0098 (7)
C120.0595 (14)0.0520 (13)0.0681 (15)0.0150 (11)−0.0130 (11)0.0080 (11)
C130.0698 (14)0.0646 (14)0.0352 (11)0.0089 (12)−0.0088 (9)−0.0009 (10)
C140.0689 (14)0.0398 (11)0.0640 (14)−0.0125 (11)0.0086 (11)−0.0075 (10)
C150.0596 (13)0.0766 (17)0.0561 (14)0.0007 (12)0.0141 (11)−0.0262 (13)
O10.0504 (8)0.0417 (8)0.0490 (9)0.0166 (6)0.0121 (6)0.0105 (7)
O20.0490 (8)0.0270 (6)0.0459 (7)−0.0068 (5)−0.0067 (6)0.0019 (6)
C2—O11.427 (2)C7—C121.508 (3)
C2—C31.531 (2)C7—C81.512 (3)
C2—C11.546 (2)C8—H8A0.9700
C2—H20.9800C8—H8B0.9700
C4—C31.526 (3)C10—C111.558 (3)
C4—C51.529 (3)C10—H10A0.9700
C4—H4A0.9700C10—H10B0.9700
C4—H4B0.9700C11—C151.525 (3)
C9—C81.523 (4)C11—C141.552 (3)
C9—C101.539 (4)C12—H12A0.9600
C9—H9A0.9700C12—H12B0.9600
C9—H9B0.9700C12—H12C0.9600
C1—C61.528 (2)C13—H13A0.9600
C1—C111.582 (2)C13—H13B0.9600
C1—H10.9800C13—H13C0.9600
C3—C131.527 (3)C14—H14A0.9600
C3—H30.9800C14—H14B0.9600
C5—C61.503 (2)C14—H14C0.9600
C5—H5A0.9700C15—H15A0.9600
C5—H5B0.9700C15—H15B0.9600
C6—C71.478 (3)C15—H15C0.9600
C6—O21.481 (2)O1—H110.72 (3)
C7—O21.455 (2)
O1—C2—C3113.36 (15)C6—C7—C8117.44 (17)
O1—C2—C1106.45 (14)C12—C7—C8115.52 (19)
C3—C2—C1110.40 (13)C7—C8—C9111.26 (19)
O1—C2—H2108.8C7—C8—H8A109.4
C3—C2—H2108.8C9—C8—H8A109.4
C1—C2—H2108.8C7—C8—H8B109.4
C3—C4—C5113.30 (14)C9—C8—H8B109.4
C3—C4—H4A108.9H8A—C8—H8B108.0
C5—C4—H4A108.9C9—C10—C11116.50 (19)
C3—C4—H4B108.9C9—C10—H10A108.2
C5—C4—H4B108.9C11—C10—H10A108.2
H4A—C4—H4B107.7C9—C10—H10B108.2
C8—C9—C10114.41 (18)C11—C10—H10B108.2
C8—C9—H9A108.7H10A—C10—H10B107.3
C10—C9—H9A108.7C15—C11—C14107.35 (18)
C8—C9—H9B108.7C15—C11—C10109.69 (18)
C10—C9—H9B108.7C14—C11—C10104.72 (17)
H9A—C9—H9B107.6C15—C11—C1109.53 (15)
C6—C1—C2109.41 (13)C14—C11—C1112.59 (15)
C6—C1—C11114.05 (14)C10—C11—C1112.74 (15)
C2—C1—C11114.57 (14)C7—C12—H12A109.5
C6—C1—H1106.0C7—C12—H12B109.5
C2—C1—H1106.0H12A—C12—H12B109.5
C11—C1—H1106.0C7—C12—H12C109.5
C4—C3—C13110.86 (16)H12A—C12—H12C109.5
C4—C3—C2108.51 (15)H12B—C12—H12C109.5
C13—C3—C2112.26 (17)C3—C13—H13A109.5
C4—C3—H3108.4C3—C13—H13B109.5
C13—C3—H3108.4H13A—C13—H13B109.5
C2—C3—H3108.4C3—C13—H13C109.5
C6—C5—C4109.51 (14)H13A—C13—H13C109.5
C6—C5—H5A109.8H13B—C13—H13C109.5
C4—C5—H5A109.8C11—C14—H14A109.5
C6—C5—H5B109.8C11—C14—H14B109.5
C4—C5—H5B109.8H14A—C14—H14B109.5
H5A—C5—H5B108.2C11—C14—H14C109.5
C7—C6—O258.92 (11)H14A—C14—H14C109.5
C7—C6—C5122.77 (16)H14B—C14—H14C109.5
O2—C6—C5112.77 (14)C11—C15—H15A109.5
C7—C6—C1120.48 (15)C11—C15—H15B109.5
O2—C6—C1114.54 (12)H15A—C15—H15B109.5
C5—C6—C1113.81 (14)C11—C15—H15C109.5
O2—C7—C660.64 (11)H15A—C15—H15C109.5
O2—C7—C12115.87 (18)H15B—C15—H15C109.5
C6—C7—C12121.17 (19)C2—O1—H11105 (2)
O2—C7—C8114.42 (17)C7—O2—C660.45 (11)
D—H···AD—HH···AD···AD—H···A
O1—H11···O2i0.72 (3)2.11 (3)2.820 (2)171 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H11⋯O2i 0.72 (3)2.11 (3)2.820 (2)171 (3)

Symmetry code: (i) .

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