Literature DB >> 24860343

9α-Hy-droxy-12-{[4-(4-hy-droxy-phen-yl)piperazin-1-yl]meth-yl}-4,8-dimethyl-3,14-dioxatri-cyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one.

Mohamed Loubidi1, Ahmed Benharref1, Lahcen El Ammari2, Mohamed Saadi2, Moha Berraho1.   

Abstract

The title compound, C25H34N2O5, was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3, 14-dioxa-tri-cyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which in turn was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule comprises a ten-membered ring fused to a five-membered ring with an additional ep-oxy ring system fused to the ten-membered ring. The five-membered ring also carries a 4-hy-droxy-phenyl-piperazin-1-ylmethyl substituent. The ten-membered ring adopts an approximate chair-chair conformation, while the piperazine ring displays a chair conformation and the five-membered ring shows an envelope conformation with the C atom closest to the hy-droxy group forming the flap. Two C atoms in the phenyl ring and the O atom of the hydroxyl group are disordered over two sites, with an occupancy ratio of 0.53 (5):0.47 (5). An intra-molecular O-H⋯N hydrogen-bond stabilizes the mol-ecular conformation. In the crystal, C-H⋯O hydrogen bonds link the mol-ecules into zigzag chains running along the a-axis direction.

Entities:  

Year:  2014        PMID: 24860343      PMCID: PMC4011210          DOI: 10.1107/S1600536814007430

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); El Hassany et al. (2004 ▶). For the reactivity of this sesquiterpene, see: Hwang et al. (2006 ▶); Neelakantan et al. (2009 ▶). For a related synthetic procedure, see: Moumou et al. (2012 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C25H34N2O5 M = 442.54 Monoclinic, a = 29.880 (5) Å b = 6.841 (5) Å c = 11.999 (5) Å β = 102.307 (5)° V = 2396 (2) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.5 × 0.03 × 0.03 mm

Data collection

Bruker X8 APEX Diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.639, T max = 0.747 13097 measured reflections 2868 independent reflections 1830 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.102 S = 1.08 2868 reflections 322 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814007430/sj5394sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814007430/sj5394Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814007430/sj5394Isup3.cml CCDC reference: 995311 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H34N2O5F(000) = 952
Mr = 442.54Dx = 1.227 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 4801 reflections
a = 29.880 (5) Åθ = 2.5–27.1°
b = 6.841 (5) ŵ = 0.09 mm1
c = 11.999 (5) ÅT = 296 K
β = 102.307 (5)°Needle, colourless
V = 2396 (2) Å30.5 × 0.03 × 0.03 mm
Z = 4
Bruker X8 APEX Diffractometer2868 independent reflections
Radiation source: fine-focus sealed tube1830 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
φ and ω scansθmax = 27.1°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −38→38
Tmin = 0.639, Tmax = 0.747k = −8→7
13097 measured reflectionsl = −15→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.102w = 1/[σ2(Fo2) + (0.0408P)2] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2868 reflectionsΔρmax = 0.14 e Å3
322 parametersΔρmin = −0.14 e Å3
1 restraintExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0063 (6)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.81526 (10)0.5109 (5)0.7206 (2)0.0388 (7)
H10.83800.44210.77820.047*
C20.78537 (10)0.6359 (5)0.7759 (2)0.0425 (7)
H20.76810.73380.72450.051*
C30.79457 (11)0.6940 (5)0.8964 (2)0.0478 (8)
C40.77809 (13)0.8925 (6)0.9221 (3)0.0645 (10)
H4A0.76990.88980.99610.077*
H4B0.75080.92540.86550.077*
C50.81482 (14)1.0505 (5)0.9224 (3)0.0687 (11)
H5A0.80071.17870.91850.082*
H5B0.83761.04280.99310.082*
C60.83780 (13)1.0258 (5)0.8232 (3)0.0548 (9)
H60.81951.05030.75160.066*
C70.88024 (13)0.9743 (5)0.8241 (3)0.0544 (9)
C80.89540 (12)0.9174 (5)0.7157 (3)0.0545 (9)
H80.92830.94320.72730.065*
C90.88783 (10)0.6976 (5)0.6916 (2)0.0464 (8)
H9A0.90700.65800.63970.056*
H9B0.89850.62750.76250.056*
C100.83879 (10)0.6316 (4)0.6409 (2)0.0369 (7)
H100.82030.74900.61840.044*
C110.83398 (10)0.5009 (5)0.5360 (2)0.0420 (7)
H110.86240.42780.53930.050*
C120.79599 (11)0.3623 (5)0.5444 (2)0.0452 (8)
C130.83375 (13)0.6105 (6)0.9824 (2)0.0674 (11)
H13A0.85960.69700.99130.101*
H13B0.84190.48520.95660.101*
H13C0.82490.59571.05420.101*
C140.91847 (14)0.9532 (7)0.9290 (3)0.0855 (13)
H14A0.94271.04270.92410.128*
H14B0.93000.82180.93340.128*
H14C0.90690.98170.99590.128*
C150.82137 (11)0.6135 (5)0.4222 (2)0.0498 (8)
H15A0.82010.52230.35970.060*
H15B0.79110.67020.41500.060*
C160.89578 (11)0.6953 (5)0.3813 (3)0.0574 (9)
H16A0.88760.62750.30890.069*
H16B0.91060.60230.43850.069*
C170.92853 (12)0.8583 (6)0.3722 (3)0.0620 (10)
H17A0.93800.92130.44590.074*
H17B0.95560.80490.35080.074*
C180.83255 (11)0.9076 (5)0.3240 (3)0.0559 (9)
H18A0.80480.95890.34270.067*
H18B0.82420.83970.25160.067*
C190.86433 (12)1.0737 (5)0.3134 (3)0.0585 (10)
H19A0.84941.16100.25310.070*
H19B0.87091.14710.38410.070*
C200.93639 (12)1.1478 (5)0.2585 (3)0.0524 (8)
C21A0.9766 (11)1.167 (5)0.303 (2)0.103 (11)0.47 (5)
H21A0.98921.08380.36300.124*0.47 (5)
C22A1.0052 (11)1.307 (6)0.269 (3)0.184 (19)0.47 (5)
H22A1.03531.31610.30920.220*0.47 (5)
C21B0.9877 (9)1.150 (3)0.3049 (16)0.059 (4)0.53 (5)
H21B1.00101.06090.36050.071*0.53 (5)
C22B1.0145 (8)1.284 (2)0.2650 (12)0.066 (5)0.53 (5)
H22B1.04621.28400.28940.079*0.53 (5)
C230.99198 (17)1.4234 (8)0.1851 (4)0.0947 (15)
C240.94645 (15)1.4229 (6)0.1412 (3)0.0817 (13)
H240.93371.51590.08720.098*
C250.91882 (13)1.2851 (6)0.1763 (3)0.0616 (10)
H250.88761.28440.14400.074*
N10.85421 (8)0.7703 (4)0.41259 (18)0.0446 (6)
N20.90743 (9)1.0027 (4)0.2877 (2)0.0527 (7)
O10.78550 (7)0.3726 (3)0.64797 (15)0.0455 (5)
O20.75946 (8)0.5494 (4)0.85303 (16)0.0582 (7)
O30.87276 (10)1.0320 (4)0.62102 (19)0.0689 (7)
H30.87080.96900.56200.103*
O40.77554 (8)0.2523 (4)0.47254 (18)0.0653 (7)
O5A1.0188 (7)1.589 (4)0.174 (3)0.116 (8)0.47 (5)
H5A11.00531.65670.12080.173*0.47 (5)
O5B1.0186 (6)1.531 (3)0.1318 (16)0.080 (4)0.53 (5)
H5B11.00341.57040.07090.120*0.53 (5)
U11U22U33U12U13U23
C10.0456 (18)0.0352 (17)0.0330 (13)−0.0035 (15)0.0025 (12)−0.0011 (13)
C20.0496 (19)0.0439 (19)0.0364 (14)−0.0019 (15)0.0147 (13)0.0051 (13)
C30.059 (2)0.0478 (19)0.0391 (15)−0.0061 (18)0.0159 (15)−0.0022 (15)
C40.075 (2)0.069 (3)0.0551 (19)0.004 (2)0.0274 (18)−0.0153 (19)
C50.089 (3)0.044 (2)0.078 (2)0.003 (2)0.028 (2)−0.0179 (18)
C60.080 (3)0.0266 (18)0.0600 (19)0.0035 (18)0.0194 (18)−0.0011 (15)
C70.068 (2)0.040 (2)0.0543 (18)−0.0102 (19)0.0107 (17)−0.0105 (16)
C80.061 (2)0.044 (2)0.0589 (19)−0.0102 (18)0.0134 (16)−0.0023 (16)
C90.051 (2)0.042 (2)0.0467 (16)−0.0034 (16)0.0113 (14)−0.0057 (15)
C100.0417 (17)0.0323 (17)0.0363 (14)−0.0004 (14)0.0075 (12)−0.0029 (12)
C110.0441 (18)0.046 (2)0.0355 (14)−0.0034 (16)0.0082 (12)−0.0079 (14)
C120.050 (2)0.0412 (19)0.0432 (16)0.0006 (17)0.0074 (14)−0.0051 (15)
C130.091 (3)0.062 (2)0.0424 (17)−0.003 (2)−0.0015 (17)−0.0021 (16)
C140.084 (3)0.102 (4)0.065 (2)−0.012 (3)0.003 (2)−0.029 (2)
C150.052 (2)0.059 (2)0.0403 (15)−0.0026 (18)0.0136 (14)−0.0042 (15)
C160.056 (2)0.055 (2)0.068 (2)0.0122 (19)0.0284 (17)0.0078 (18)
C170.057 (2)0.056 (2)0.079 (2)0.018 (2)0.0284 (18)0.0184 (19)
C180.053 (2)0.065 (2)0.0532 (18)0.0101 (19)0.0180 (16)0.0112 (17)
C190.061 (2)0.057 (2)0.0636 (19)0.0196 (19)0.0258 (17)0.0146 (17)
C200.051 (2)0.051 (2)0.0564 (19)0.0008 (18)0.0149 (17)0.0001 (17)
C21A0.026 (12)0.111 (16)0.168 (17)0.010 (9)0.009 (8)0.088 (13)
C22A0.034 (10)0.23 (3)0.27 (3)−0.002 (12)−0.005 (11)0.13 (3)
C21B0.025 (9)0.062 (8)0.085 (8)0.017 (6)0.002 (5)0.015 (7)
C22B0.041 (7)0.049 (8)0.097 (9)−0.011 (5)−0.005 (5)0.022 (6)
C230.072 (3)0.087 (4)0.116 (4)−0.027 (3)−0.001 (3)0.033 (3)
C240.080 (3)0.077 (3)0.079 (2)−0.025 (3)−0.003 (2)0.025 (2)
C250.062 (2)0.058 (2)0.059 (2)−0.010 (2)0.0006 (17)0.0061 (19)
N10.0462 (16)0.0481 (16)0.0422 (13)0.0059 (13)0.0156 (11)0.0046 (12)
N20.0531 (17)0.0512 (18)0.0590 (15)0.0100 (15)0.0233 (13)0.0086 (14)
O10.0577 (14)0.0379 (12)0.0422 (11)−0.0094 (11)0.0136 (9)−0.0071 (9)
O20.0718 (16)0.0643 (17)0.0440 (11)−0.0185 (14)0.0245 (10)−0.0059 (11)
O30.100 (2)0.0462 (15)0.0619 (13)−0.0122 (15)0.0210 (14)0.0062 (12)
O40.0738 (17)0.0670 (17)0.0549 (13)−0.0186 (14)0.0136 (12)−0.0250 (12)
O5A0.090 (7)0.087 (11)0.138 (16)−0.065 (8)−0.048 (9)0.047 (10)
O5B0.066 (5)0.084 (9)0.080 (6)−0.054 (5)−0.010 (5)0.029 (6)
C1—O11.454 (3)C15—N11.475 (4)
C1—C21.490 (4)C15—H15A0.9700
C1—C101.542 (4)C15—H15B0.9700
C1—H10.9800C16—N11.464 (4)
C2—O21.454 (3)C16—C171.503 (5)
C2—C31.468 (4)C16—H16A0.9700
C2—H20.9800C16—H16B0.9700
C3—O21.455 (4)C17—N21.459 (4)
C3—C131.499 (4)C17—H17A0.9700
C3—C41.499 (5)C17—H17B0.9700
C4—C51.540 (5)C18—N11.462 (4)
C4—H4A0.9700C18—C191.504 (5)
C4—H4B0.9700C18—H18A0.9700
C5—C61.505 (5)C18—H18B0.9700
C5—H5A0.9700C19—N21.469 (4)
C5—H5B0.9700C19—H19A0.9700
C6—C71.314 (5)C19—H19B0.9700
C6—H60.9300C20—C21A1.21 (3)
C7—C141.516 (5)C20—C251.381 (5)
C7—C81.516 (4)C20—N21.409 (4)
C8—O31.426 (4)C20—C21B1.52 (3)
C8—C91.539 (5)C21A—C22A1.41 (4)
C8—H80.9800C21A—H21A0.9300
C9—C101.530 (4)C22A—C231.27 (3)
C9—H9A0.9700C22A—H22A0.9300
C9—H9B0.9700C21B—C22B1.37 (3)
C10—C111.526 (4)C21B—H21B0.9300
C10—H100.9800C22B—C231.415 (18)
C11—C121.499 (4)C22B—H22B0.9300
C11—C151.543 (4)C23—O5B1.340 (15)
C11—H110.9800C23—C241.350 (6)
C12—O41.208 (3)C23—O5A1.411 (17)
C12—O11.347 (3)C24—C251.377 (5)
C13—H13A0.9600C24—H240.9300
C13—H13B0.9600C25—H250.9300
C13—H13C0.9600O3—H30.8200
C14—H14A0.9600O5A—H5A10.8200
C14—H14B0.9600O5B—H5B10.8200
C14—H14C0.9600
O1—C1—C2107.0 (2)N1—C15—C11113.0 (2)
O1—C1—C10106.13 (18)N1—C15—H15A109.0
C2—C1—C10111.3 (2)C11—C15—H15A109.0
O1—C1—H1110.7N1—C15—H15B109.0
C2—C1—H1110.7C11—C15—H15B109.0
C10—C1—H1110.7H15A—C15—H15B107.8
O2—C2—C359.74 (17)N1—C16—C17111.1 (3)
O2—C2—C1120.0 (3)N1—C16—H16A109.4
C3—C2—C1126.1 (3)C17—C16—H16A109.4
O2—C2—H2113.5N1—C16—H16B109.4
C3—C2—H2113.5C17—C16—H16B109.4
C1—C2—H2113.5H16A—C16—H16B108.0
O2—C3—C259.63 (18)N2—C17—C16111.2 (3)
O2—C3—C13112.6 (3)N2—C17—H17A109.4
C2—C3—C13122.0 (3)C16—C17—H17A109.4
O2—C3—C4116.5 (3)N2—C17—H17B109.4
C2—C3—C4116.6 (3)C16—C17—H17B109.4
C13—C3—C4116.5 (3)H17A—C17—H17B108.0
C3—C4—C5111.8 (3)N1—C18—C19111.0 (3)
C3—C4—H4A109.3N1—C18—H18A109.4
C5—C4—H4A109.3C19—C18—H18A109.4
C3—C4—H4B109.3N1—C18—H18B109.4
C5—C4—H4B109.3C19—C18—H18B109.4
H4A—C4—H4B107.9H18A—C18—H18B108.0
C6—C5—C4111.4 (3)N2—C19—C18111.5 (3)
C6—C5—H5A109.4N2—C19—H19A109.3
C4—C5—H5A109.4C18—C19—H19A109.3
C6—C5—H5B109.4N2—C19—H19B109.3
C4—C5—H5B109.4C18—C19—H19B109.3
H5A—C5—H5B108.0H19A—C19—H19B108.0
C7—C6—C5128.8 (3)C21A—C20—C25115.6 (14)
C7—C6—H6115.6C21A—C20—N2124.6 (14)
C5—C6—H6115.6C25—C20—N2119.8 (3)
C6—C7—C14126.0 (3)C21A—C20—C21B7 (2)
C6—C7—C8121.7 (3)C25—C20—C21B117.1 (10)
C14—C7—C8112.2 (3)N2—C20—C21B122.9 (10)
O3—C8—C7111.4 (3)C20—C21A—C22A123 (2)
O3—C8—C9111.2 (3)C20—C21A—H21A118.3
C7—C8—C9110.7 (3)C22A—C21A—H21A118.3
O3—C8—H8107.8C23—C22A—C21A124 (2)
C7—C8—H8107.8C23—C22A—H22A118.2
C9—C8—H8107.8C21A—C22A—H22A118.2
C10—C9—C8116.9 (3)C22B—C21B—C20120.0 (17)
C10—C9—H9A108.1C22B—C21B—H21B120.0
C8—C9—H9A108.1C20—C21B—H21B120.0
C10—C9—H9B108.1C21B—C22B—C23117.2 (17)
C8—C9—H9B108.1C21B—C22B—H22B121.4
H9A—C9—H9B107.3C23—C22B—H22B121.4
C11—C10—C9114.5 (2)C22A—C23—O5B127.0 (17)
C11—C10—C1102.9 (2)C22A—C23—C24115.0 (15)
C9—C10—C1115.9 (2)O5B—C23—C24117.8 (8)
C11—C10—H10107.7C22A—C23—O5A119.3 (17)
C9—C10—H10107.7O5B—C23—O5A26.9 (13)
C1—C10—H10107.7C24—C23—O5A120.6 (10)
C12—C11—C10104.8 (2)C22A—C23—C22B13 (2)
C12—C11—C15109.2 (2)O5B—C23—C22B116.5 (12)
C10—C11—C15113.6 (3)C24—C23—C22B123.9 (9)
C12—C11—H11109.7O5A—C23—C22B114.0 (11)
C10—C11—H11109.7C23—C24—C25120.2 (4)
C15—C11—H11109.7C23—C24—H24119.9
O4—C12—O1120.6 (3)C25—C24—H24119.9
O4—C12—C11128.4 (3)C24—C25—C20121.5 (4)
O1—C12—C11110.9 (2)C24—C25—H25119.3
C3—C13—H13A109.5C20—C25—H25119.3
C3—C13—H13B109.5C18—N1—C16107.9 (2)
H13A—C13—H13B109.5C18—N1—C15109.0 (2)
C3—C13—H13C109.5C16—N1—C15112.3 (3)
H13A—C13—H13C109.5C20—N2—C17116.9 (3)
H13B—C13—H13C109.5C20—N2—C19115.6 (3)
C7—C14—H14A109.5C17—N2—C19110.2 (2)
C7—C14—H14B109.5C12—O1—C1110.8 (2)
H14A—C14—H14B109.5C2—O2—C360.63 (18)
C7—C14—H14C109.5C8—O3—H3109.5
H14A—C14—H14C109.5C23—O5A—H5A1109.5
H14B—C14—H14C109.5C23—O5B—H5B1109.5
D—H···AD—HH···AD···AD—H···A
O3—H3···N10.822.223.030 (4)169
C2—H2···O4i0.982.453.243 (4)138
C4—H4A···O2ii0.972.433.315 (5)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯N10.822.223.030 (4)169
C2—H2⋯O4i 0.982.453.243 (4)138
C4—H4A⋯O2ii 0.972.433.315 (5)151

Symmetry codes: (i) ; (ii) .

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