Literature DB >> 22412505

9α-Hy-droxy-12-{[4-(4-meth-oxy-phen-yl)piperazin-1-yl]meth-yl}-4,8-dimethyl-3,14-dioxatricyclo-[9.3.0.0]tetra-dec-7-en-13-one.

Mohamed Moumou, Ahmed Benharref, Jean-Claude Daran, Fouad Mellouki, Moha Berraho.   

Abstract

The title compound, C(26)H(36)N(2)O(5), was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methyl-ene-3,14-dioxatricyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), wich was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from fused five- and ten-membered rings with the meth-oxy-phenyl-piperazine group as a substituent. The ten-membered ring adopts an approximate chair-chair conformation, while the piperazine ring displays a chair conformation and the five-membered ring a flattened envelope conformation; the C(H)-C-C(H) atoms representing the flap lie out of the mean plane through the remaining four atoms by 0.343 (3) Å. The dihedral angle between the mean planes of the ten-membered ring and the lactone ring is 18.12 (14)°. An intra-molecular O-H⋯N hydrogen bond occurs. The crystal structure features weak C-H⋯O inter-actions.

Entities:  

Year:  2012        PMID: 22412505      PMCID: PMC3297315          DOI: 10.1107/S1600536812003662

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); Bellakhdar (1997 ▶); El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C26H36N2O5 M = 456.57 Orthorhombic, a = 6.7066 (7) Å b = 11.9033 (11) Å c = 30.322 (4) Å V = 2420.6 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 180 K 0.33 × 0.17 × 0.04 mm

Data collection

Agilent Xcalibur Sapphire1 (long nozzle) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010 ▶) T min = 0.732, T max = 1.000 14543 measured reflections 4925 independent reflections 3663 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.130 S = 1.04 4925 reflections 303 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶)and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812003662/ds2172sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812003662/ds2172Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812003662/ds2172Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H36N2O5F(000) = 984
Mr = 456.57Dx = 1.253 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 14543 reflections
a = 6.7066 (7) Åθ = 3.1–26.4°
b = 11.9033 (11) ŵ = 0.09 mm1
c = 30.322 (4) ÅT = 180 K
V = 2420.6 (4) Å3Platelet, colourless
Z = 40.33 × 0.17 × 0.04 mm
Agilent Xcalibur Sapphire1 (long nozzle) diffractometer4925 independent reflections
Radiation source: fine-focus sealed tube3663 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
Detector resolution: 8.2632 pixels mm-1θmax = 26.4°, θmin = 3.1°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010)k = −14→14
Tmin = 0.732, Tmax = 1.000l = −37→37
14543 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0567P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4925 reflectionsΔρmax = 0.25 e Å3
303 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0073 (12)
Experimental. Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. CrysAlisPro (Agilent Technologies)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4429 (4)0.9320 (2)0.06430 (8)0.0236 (6)
H10.51560.97470.08770.028*
C20.3207 (4)1.0088 (2)0.03673 (9)0.0276 (6)
H20.21980.96920.01810.033*
C40.2646 (4)1.1235 (2)0.04810 (10)0.0328 (7)
C50.0642 (5)1.1608 (2)0.03175 (11)0.0440 (8)
H5A0.03341.12150.00380.053*
H5B0.06811.24250.02560.053*
C6−0.1006 (5)1.1365 (3)0.06533 (12)0.0500 (9)
H6A−0.09281.19170.08970.060*
H6B−0.23231.14470.05100.060*
C7−0.0803 (4)1.0198 (2)0.08363 (11)0.0377 (7)
H7−0.10120.95980.06350.045*
C8−0.0368 (5)0.9912 (3)0.12466 (10)0.0396 (8)
C90.0201 (4)0.8728 (3)0.13688 (10)0.0382 (7)
H9−0.01450.86140.16860.046*
C100.2457 (4)0.8572 (2)0.13205 (9)0.0306 (6)
H10A0.28710.79200.15020.037*
H10B0.31330.92450.14400.037*
C110.3171 (4)0.8384 (2)0.08456 (8)0.0227 (6)
H110.19590.82910.06570.027*
C120.4457 (4)0.7345 (2)0.07835 (8)0.0243 (6)
H120.52180.71940.10610.029*
C130.5872 (4)0.7650 (2)0.04265 (9)0.0266 (6)
C150.3307 (4)0.6301 (2)0.06537 (9)0.0288 (6)
H15A0.26350.64370.03680.035*
H15B0.42560.56730.06120.035*
C160.2748 (4)0.5460 (2)0.13653 (9)0.0309 (7)
H16A0.36590.60110.15040.037*
H16B0.35520.48060.12710.037*
C170.1246 (4)0.5089 (3)0.16934 (9)0.0358 (7)
H17A0.19330.47460.19490.043*
H17B0.04880.57490.18000.043*
C18−0.1058 (4)0.4730 (2)0.11077 (9)0.0327 (7)
H18A−0.19520.53570.11900.039*
H18B−0.18780.41380.09670.039*
C190.0472 (4)0.5141 (2)0.07857 (9)0.0328 (7)
H19A0.12640.44950.06780.039*
H19B−0.02130.54800.05290.039*
C20−0.1351 (4)0.3686 (2)0.18020 (9)0.0271 (6)
C21−0.0596 (5)0.3360 (2)0.22117 (9)0.0383 (7)
H210.06990.35980.22970.046*
C22−0.1693 (5)0.2703 (3)0.24923 (10)0.0429 (8)
H22−0.11470.24930.27690.051*
C23−0.3549 (5)0.2348 (3)0.23802 (10)0.0413 (8)
C24−0.4336 (5)0.2676 (3)0.19821 (11)0.0467 (8)
H24−0.56440.24470.19020.056*
C25−0.3234 (4)0.3338 (3)0.16971 (10)0.0387 (7)
H25−0.37980.35550.14230.046*
C260.3438 (5)1.1828 (3)0.08780 (12)0.0526 (10)
H26A0.47151.14940.09640.079*
H26B0.24851.17560.11210.079*
H26C0.36341.26250.08090.079*
C27−0.0231 (7)1.0695 (3)0.16314 (13)0.0744 (13)
H27A−0.03601.14720.15280.112*
H27B0.10621.05980.17770.112*
H27C−0.13041.05270.18410.112*
C28−0.6231 (7)0.1128 (6)0.2554 (2)0.134 (3)
H28A−0.73100.16780.25270.201*
H28B−0.65910.05640.27760.201*
H28C−0.60190.07580.22690.201*
N10.1814 (3)0.59719 (17)0.09797 (7)0.0254 (5)
N2−0.0123 (3)0.42794 (18)0.15021 (7)0.0286 (5)
O30.4135 (3)1.10270 (15)0.01501 (7)0.0388 (5)
O4−0.0873 (3)0.79295 (17)0.11206 (8)0.0440 (6)
H4−0.01120.74000.10490.066*
O5−0.4482 (4)0.1672 (2)0.26829 (8)0.0655 (8)
O120.6957 (3)0.70592 (16)0.02200 (7)0.0392 (5)
O140.5817 (3)0.87658 (14)0.03489 (6)0.0277 (4)
U11U22U33U12U13U23
C10.0273 (14)0.0170 (13)0.0264 (13)0.0045 (11)0.0020 (12)−0.0043 (11)
C20.0301 (14)0.0167 (12)0.0360 (15)−0.0029 (12)−0.0034 (13)0.0024 (13)
C40.0362 (15)0.0138 (13)0.0484 (18)0.0002 (12)−0.0031 (14)−0.0001 (13)
C50.0467 (18)0.0231 (15)0.062 (2)0.0085 (14)−0.0062 (17)0.0091 (15)
C60.0412 (18)0.0364 (18)0.072 (2)0.0170 (16)−0.0093 (18)0.0051 (18)
C70.0255 (14)0.0313 (16)0.056 (2)0.0021 (14)−0.0035 (15)−0.0011 (15)
C80.0371 (17)0.0342 (17)0.0476 (19)0.0160 (15)0.0053 (15)−0.0058 (15)
C90.0415 (17)0.0354 (16)0.0377 (16)0.0084 (14)0.0085 (15)−0.0036 (15)
C100.0373 (15)0.0254 (15)0.0292 (15)0.0072 (13)0.0056 (13)0.0000 (13)
C110.0273 (13)0.0154 (12)0.0254 (13)0.0033 (11)−0.0001 (11)−0.0005 (11)
C120.0321 (14)0.0164 (13)0.0243 (13)0.0055 (11)0.0037 (12)−0.0002 (11)
C130.0318 (14)0.0178 (13)0.0301 (15)0.0059 (12)0.0005 (13)−0.0005 (12)
C150.0411 (15)0.0178 (13)0.0275 (14)0.0053 (13)0.0049 (13)0.0000 (12)
C160.0339 (16)0.0270 (15)0.0319 (15)−0.0020 (12)−0.0040 (13)0.0092 (13)
C170.0423 (17)0.0355 (16)0.0294 (15)−0.0113 (14)−0.0069 (14)0.0075 (13)
C180.0419 (17)0.0257 (14)0.0304 (15)−0.0056 (13)−0.0096 (14)0.0057 (12)
C190.0479 (17)0.0237 (14)0.0269 (14)−0.0051 (14)−0.0052 (14)0.0025 (12)
C200.0375 (15)0.0154 (12)0.0283 (14)0.0028 (11)−0.0006 (12)−0.0014 (11)
C210.0473 (18)0.0352 (17)0.0325 (15)−0.0144 (15)−0.0045 (15)0.0053 (14)
C220.059 (2)0.0404 (18)0.0295 (15)−0.0120 (17)−0.0055 (16)0.0058 (15)
C230.0438 (18)0.0407 (18)0.0395 (18)−0.0049 (15)0.0043 (15)0.0094 (15)
C240.0338 (16)0.048 (2)0.058 (2)−0.0046 (16)−0.0044 (16)0.0198 (17)
C250.0367 (16)0.0369 (17)0.0425 (17)0.0059 (15)−0.0034 (14)0.0138 (15)
C260.056 (2)0.0249 (16)0.077 (3)0.0041 (16)−0.0127 (19)−0.0184 (17)
C270.103 (3)0.056 (2)0.064 (2)0.039 (2)−0.001 (2)−0.022 (2)
C280.076 (3)0.183 (6)0.143 (5)−0.071 (4)−0.035 (3)0.119 (5)
N10.0358 (13)0.0180 (11)0.0223 (11)−0.0021 (10)−0.0044 (10)0.0038 (9)
N20.0372 (13)0.0231 (11)0.0255 (12)−0.0044 (10)−0.0039 (11)0.0039 (10)
O30.0443 (11)0.0162 (9)0.0558 (13)−0.0018 (9)0.0035 (11)0.0104 (9)
O40.0342 (12)0.0337 (12)0.0640 (14)−0.0016 (10)0.0071 (11)0.0012 (11)
O50.0575 (15)0.0798 (19)0.0593 (15)−0.0293 (15)−0.0015 (13)0.0339 (15)
O120.0498 (13)0.0286 (10)0.0390 (12)0.0102 (10)0.0163 (10)−0.0017 (9)
O140.0314 (10)0.0177 (9)0.0341 (10)0.0027 (8)0.0081 (9)0.0003 (8)
C1—O141.448 (3)C16—C171.483 (4)
C1—C21.485 (4)C16—H16A0.9900
C1—C111.526 (3)C16—H16B0.9900
C1—H11.0000C17—N21.452 (3)
C2—O31.439 (3)C17—H17A0.9900
C2—C41.457 (4)C17—H17B0.9900
C2—H21.0000C18—N21.453 (3)
C4—O31.437 (4)C18—C191.499 (4)
C4—C261.494 (4)C18—H18A0.9900
C4—C51.500 (4)C18—H18B0.9900
C5—C61.530 (4)C19—N11.460 (3)
C5—H5A0.9900C19—H19A0.9900
C5—H5B0.9900C19—H19B0.9900
C6—C71.502 (4)C20—C251.367 (4)
C6—H6A0.9900C20—C211.396 (4)
C6—H6B0.9900C20—N21.416 (3)
C7—C81.323 (4)C21—C221.370 (4)
C7—H70.9500C21—H210.9500
C8—C271.496 (5)C22—C231.358 (4)
C8—C91.507 (4)C22—H220.9500
C9—O41.410 (4)C23—O51.371 (4)
C9—C101.532 (4)C23—C241.374 (4)
C9—H91.0000C24—C251.384 (4)
C10—C111.534 (4)C24—H240.9500
C10—H10A0.9900C25—H250.9500
C10—H10B0.9900C26—H26A0.9800
C11—C121.520 (3)C26—H26B0.9800
C11—H111.0000C26—H26C0.9800
C12—C131.484 (4)C27—H27A0.9800
C12—C151.515 (4)C27—H27B0.9800
C12—H121.0000C27—H27C0.9800
C13—O121.190 (3)C28—O51.396 (5)
C13—O141.350 (3)C28—H28A0.9800
C15—N11.460 (3)C28—H28B0.9800
C15—H15A0.9900C28—H28C0.9800
C15—H15B0.9900O4—H40.8400
C16—N11.460 (3)
O14—C1—C2106.8 (2)N1—C16—H16A109.3
O14—C1—C11105.74 (18)C17—C16—H16A109.3
C2—C1—C11111.8 (2)N1—C16—H16B109.3
O14—C1—H1110.8C17—C16—H16B109.3
C2—C1—H1110.8H16A—C16—H16B107.9
C11—C1—H1110.8N2—C17—C16111.0 (2)
O3—C2—C459.49 (17)N2—C17—H17A109.4
O3—C2—C1119.8 (2)C16—C17—H17A109.4
C4—C2—C1125.9 (2)N2—C17—H17B109.4
O3—C2—H2113.6C16—C17—H17B109.4
C4—C2—H2113.6H17A—C17—H17B108.0
C1—C2—H2113.6N2—C18—C19111.2 (2)
O3—C4—C259.63 (17)N2—C18—H18A109.4
O3—C4—C26113.4 (3)C19—C18—H18A109.4
C2—C4—C26122.8 (3)N2—C18—H18B109.4
O3—C4—C5116.3 (2)C19—C18—H18B109.4
C2—C4—C5115.5 (3)H18A—C18—H18B108.0
C26—C4—C5116.4 (3)N1—C19—C18112.4 (2)
C4—C5—C6111.8 (3)N1—C19—H19A109.1
C4—C5—H5A109.3C18—C19—H19A109.1
C6—C5—H5A109.3N1—C19—H19B109.1
C4—C5—H5B109.3C18—C19—H19B109.1
C6—C5—H5B109.3H19A—C19—H19B107.9
H5A—C5—H5B107.9C25—C20—C21117.2 (3)
C7—C6—C5110.8 (3)C25—C20—N2122.6 (2)
C7—C6—H6A109.5C21—C20—N2119.9 (2)
C5—C6—H6A109.5C22—C21—C20121.1 (3)
C7—C6—H6B109.5C22—C21—H21119.5
C5—C6—H6B109.5C20—C21—H21119.5
H6A—C6—H6B108.1C23—C22—C21121.0 (3)
C8—C7—C6127.2 (3)C23—C22—H22119.5
C8—C7—H7116.4C21—C22—H22119.5
C6—C7—H7116.4C22—C23—O5115.7 (3)
C7—C8—C27126.0 (3)C22—C23—C24118.9 (3)
C7—C8—C9121.9 (3)O5—C23—C24125.4 (3)
C27—C8—C9112.0 (3)C23—C24—C25120.3 (3)
O4—C9—C8111.7 (3)C23—C24—H24119.8
O4—C9—C10111.8 (2)C25—C24—H24119.8
C8—C9—C10109.9 (3)C20—C25—C24121.4 (3)
O4—C9—H9107.7C20—C25—H25119.3
C8—C9—H9107.7C24—C25—H25119.3
C10—C9—H9107.7C4—C26—H26A109.5
C9—C10—C11114.6 (2)C4—C26—H26B109.5
C9—C10—H10A108.6H26A—C26—H26B109.5
C11—C10—H10A108.6C4—C26—H26C109.5
C9—C10—H10B108.6H26A—C26—H26C109.5
C11—C10—H10B108.6H26B—C26—H26C109.5
H10A—C10—H10B107.6C8—C27—H27A109.5
C12—C11—C1103.3 (2)C8—C27—H27B109.5
C12—C11—C10114.3 (2)H27A—C27—H27B109.5
C1—C11—C10116.4 (2)C8—C27—H27C109.5
C12—C11—H11107.5H27A—C27—H27C109.5
C1—C11—H11107.5H27B—C27—H27C109.5
C10—C11—H11107.5O5—C28—H28A109.5
C13—C12—C15109.7 (2)O5—C28—H28B109.5
C13—C12—C11104.7 (2)H28A—C28—H28B109.5
C15—C12—C11114.2 (2)O5—C28—H28C109.5
C13—C12—H12109.4H28A—C28—H28C109.5
C15—C12—H12109.4H28B—C28—H28C109.5
C11—C12—H12109.4C16—N1—C15111.1 (2)
O12—C13—O14120.4 (2)C16—N1—C19107.7 (2)
O12—C13—C12129.1 (2)C15—N1—C19109.4 (2)
O14—C13—C12110.5 (2)C20—N2—C17116.3 (2)
N1—C15—C12113.2 (2)C20—N2—C18117.5 (2)
N1—C15—H15A108.9C17—N2—C18110.9 (2)
C12—C15—H15A108.9C4—O3—C260.88 (17)
N1—C15—H15B108.9C9—O4—H4109.5
C12—C15—H15B108.9C23—O5—C28117.9 (3)
H15A—C15—H15B107.8C13—O14—C1111.0 (2)
N1—C16—C17111.7 (2)
D—H···AD—HH···AD···AD—H···A
O4—H4···N10.842.142.977 (4)170
C2—H2···O12i1.002.423.225 (4)137
C5—H5B···O3ii0.992.453.310 (4)145
C7—H7···O14iii0.952.503.198 (4)130
C15—H15A···O12i0.992.573.413 (4)143
C15—H15A···O14i0.992.503.469 (4)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O4—H4⋯N10.842.142.977 (4)170
C2—H2⋯O12i1.002.423.225 (4)137
C5—H5B⋯O3ii0.992.453.310 (4)145
C7—H7⋯O14iii0.952.503.198 (4)130
C15—H15A⋯O12i0.992.573.413 (4)143
C15—H15A⋯O14i0.992.503.469 (4)165

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

4.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  1 in total

1.  9α-Hy-droxy-12-{[4-(4-hy-droxy-phen-yl)piperazin-1-yl]meth-yl}-4,8-dimethyl-3,14-dioxatri-cyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one.

Authors:  Mohamed Loubidi; Ahmed Benharref; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-09
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