Literature DB >> 24849338

Developmental variations among Panagrolaimid nematodes indicate developmental system drift within a small taxonomic unit.

Philipp H Schiffer1, Ndifon A Nsah, Henny Grotehusmann, Michael Kroiher, Curtis Loer, Einhard Schierenberg.   

Abstract

Comparative studies of nematode embryogenesis among different clades revealed considerable variations. However, to what extent developmental differences exist between closely related species has mostly remained nebulous. Here, we explore the correlation between phylogenetic neighborhood and developmental variation in a restricted and morphologically particularly uniform taxonomic group (Panagrolaimidae) to determine to what extent (1) morphological and developmental characters go along with molecular data and thus can serve as diagnostic tools for the definition of kinship and (2) developmental system drift (DSD; modifications of developmental patterns without corresponding morphological changes) can be found within a small taxonomic unit. Our molecular approaches firmly support subdivision of Panagrolaimid nematodes into two monophyletic groups. These can be discriminated by distinct peculiarities in early embryonic cell lineages and a mirror-image expression pattern of the gene skn-1. This suggests major changes in the logic of cell specification and the action of DSD in the studied representatives of the two neighboring nematode taxa.

Mesh:

Year:  2014        PMID: 24849338     DOI: 10.1007/s00427-014-0471-2

Source DB:  PubMed          Journal:  Dev Genes Evol        ISSN: 0949-944X            Impact factor:   0.900


  17 in total

1.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

2.  skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo.

Authors:  B Bowerman; B A Eaton; J R Priess
Journal:  Cell       Date:  1992-03-20       Impact factor: 41.582

3.  RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.

Authors:  Alexandros Stamatakis
Journal:  Bioinformatics       Date:  2006-08-23       Impact factor: 6.937

4.  CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

Authors:  Genis Parra; Keith Bradnam; Ian Korf
Journal:  Bioinformatics       Date:  2007-03-01       Impact factor: 6.937

Review 5.  Nematode model systems in evolution and development.

Authors:  Ralf J Sommer; Daniel J Bumbarger
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2012-01-27       Impact factor: 5.814

6.  Differences in maternal supply and early development of closely related nematode species.

Authors:  Magdalena Laugsch; Einhard Schierenberg
Journal:  Int J Dev Biol       Date:  2004-09       Impact factor: 2.203

7.  The maternal gene skn-1 encodes a protein that is distributed unequally in early C. elegans embryos.

Authors:  B Bowerman; B W Draper; C C Mello; J R Priess
Journal:  Cell       Date:  1993-08-13       Impact factor: 41.582

8.  Knockdown of SKN-1 and the Wnt effector TCF/POP-1 reveals differences in endomesoderm specification in C. briggsae as compared with C. elegans.

Authors:  Katy Tan-Hui Lin; Gina Broitman-Maduro; Wendy W K Hung; Serena Cervantes; Morris F Maduro
Journal:  Dev Biol       Date:  2008-10-19       Impact factor: 3.582

9.  Evolution of embryonic development in nematodes.

Authors:  Jens Schulze; Einhard Schierenberg
Journal:  Evodevo       Date:  2011-09-20       Impact factor: 2.250

10.  Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Authors:  Fabian Sievers; Andreas Wilm; David Dineen; Toby J Gibson; Kevin Karplus; Weizhong Li; Rodrigo Lopez; Hamish McWilliam; Michael Remmert; Johannes Söding; Julie D Thompson; Desmond G Higgins
Journal:  Mol Syst Biol       Date:  2011-10-11       Impact factor: 11.429

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  5 in total

1.  The gene regulatory program of Acrobeloides nanus reveals conservation of phylum-specific expression.

Authors:  Philipp H Schiffer; Avital L Polsky; Alison G Cole; Julia I R Camps; Michael Kroiher; David H Silver; Vladislav Grishkevich; Leon Anavy; Georgios Koutsovoulos; Tamar Hashimshony; Itai Yanai
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-06       Impact factor: 11.205

Review 2.  Evolution and Developmental System Drift in the Endoderm Gene Regulatory Network of Caenorhabditis and Other Nematodes.

Authors:  Chee Kiang Ewe; Yamila N Torres Cleuren; Joel H Rothman
Journal:  Front Cell Dev Biol       Date:  2020-03-18

3.  Differences in the genetic control of early egg development and reproduction between C. elegans and its parthenogenetic relative D. coronatus.

Authors:  Christopher Kraus; Philipp H Schiffer; Hiroshi Kagoshima; Hideaki Hiraki; Theresa Vogt; Michael Kroiher; Yuji Kohara; Einhard Schierenberg
Journal:  Evodevo       Date:  2017-10-18       Impact factor: 2.250

4.  Evolutionary Dynamics of the SKN-1 → MED → END-1,3 Regulatory Gene Cascade in Caenorhabditis Endoderm Specification.

Authors:  Morris F Maduro
Journal:  G3 (Bethesda)       Date:  2020-01-07       Impact factor: 3.154

5.  Signatures of the Evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes.

Authors:  Philipp H Schiffer; Etienne G J Danchin; Ann M Burnell; Christopher J Creevey; Simon Wong; Ilona Dix; Georgina O'Mahony; Bridget A Culleton; Corinne Rancurel; Gary Stier; Elizabeth A Martínez-Salazar; Aleksandra Marconi; Urmi Trivedi; Michael Kroiher; Michael A S Thorne; Einhard Schierenberg; Thomas Wiehe; Mark Blaxter
Journal:  iScience       Date:  2019-10-24
  5 in total

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