Literature DB >> 24839343

Real-time tracking of CO migration and binding in the α and β subunits of human hemoglobin via 150-ps time-resolved Laue crystallography.

Friedrich Schotte1, Hyun Sun Cho1, Jayashree Soman2, Michael Wulff3, John S Olson2, Philip A Anfinrud1.   

Abstract

We have developed the method of picosecond Laue crystallography and used this capability to probe ligand dynamics in tetrameric R-state hemoglobin (Hb). Time-resolved, 2 Å-resolution electron density maps of photolyzed HbCO reveal the time-dependent population of CO in the binding (A) and primary docking (B) sites of both α and β subunits from 100 ps to 10 μs. The proximity of the B site in the β subunit is about 0.25 Å closer to its A binding site, and its kBA rebinding rate (~300 μs-1) is six times faster, suggesting distal control of the rebinding dynamics. Geminate rebinding in the β subunit exhibits both prompt and delayed geminate phases. We developed a microscopic model to quantitatively explain the observed kinetics, with three states for the α subunit and four states for the β subunit. This model provides a consistent framework for interpreting rebinding kinetics reported in prior studies of both HbCO and HbO2.

Entities:  

Keywords:  Geminate rebinding; Hemoglobin; Ligand migration; Time-resolved Laue crystallography

Year:  2013        PMID: 24839343      PMCID: PMC4020136          DOI: 10.1016/j.chemphys.2012.12.030

Source DB:  PubMed          Journal:  Chem Phys        ISSN: 0301-0104            Impact factor:   2.348


  36 in total

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Journal:  J Phys Chem B       Date:  2012-05-30       Impact factor: 2.991

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Authors:  L P Murray; J Hofrichter; E R Henry; M Ikeda-Saito; K Kitagishi; T Yonetani; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

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Journal:  J Biol Chem       Date:  1988-01-15       Impact factor: 5.157

7.  Ligand binding to heme proteins: relevance of low-temperature data.

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Journal:  Biochemistry       Date:  1986-06-03       Impact factor: 3.162

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Journal:  Proc Natl Acad Sci U S A       Date:  1980-10       Impact factor: 11.205

9.  The mechanism of autooxidation of myoglobin.

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Journal:  J Biol Chem       Date:  1993-04-05       Impact factor: 5.157

10.  Nanosecond optical spectra of iron-cobalt hybrid hemoglobins: geminate recombination, conformational changes, and intersubunit communication.

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Journal:  Biochemistry       Date:  1985-05-21       Impact factor: 3.162

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  9 in total

1.  Serial femtosecond crystallography opens new avenues for Structural Biology.

Authors:  Jesse Coe; Petra Fromme
Journal:  Protein Pept Lett       Date:  2016       Impact factor: 1.890

2.  Picosecond Photobiology: Watching a Signaling Protein Function in Real Time via Time-Resolved Small- and Wide-Angle X-ray Scattering.

Authors:  Hyun Sun Cho; Friedrich Schotte; Naranbaatar Dashdorj; John Kyndt; Robert Henning; Philip A Anfinrud
Journal:  J Am Chem Soc       Date:  2016-07-05       Impact factor: 15.419

3.  Melting of Hemoglobin in Native Solutions as measured by IMS-MS.

Authors:  Daniel W Woodall; Christopher J Brown; Shannon A Raab; Tarick J El-Baba; Arthur Laganowsky; David H Russell; David E Clemmer
Journal:  Anal Chem       Date:  2020-02-07       Impact factor: 6.986

4.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

5.  Sub-100-ps structural dynamics of horse heart myoglobin probed by time-resolved X-ray solution scattering.

Authors:  Key Young Oang; Kyung Hwan Kim; Junbeom Jo; Youngmin Kim; Jong Goo Kim; Tae Wu Kim; Sunhong Jun; Jeongho Kim; Hyotcherl Ihee
Journal:  Chem Phys       Date:  2014-10-17       Impact factor: 2.348

Review 6.  Kinetic mechanisms for O2 binding to myoglobins and hemoglobins.

Authors:  John S Olson
Journal:  Mol Aspects Med       Date:  2021-09-17

Review 7.  Time-resolved X-ray scattering studies of proteins.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Philip Anfinrud
Journal:  Curr Opin Struct Biol       Date:  2021-06-25       Impact factor: 7.786

8.  Direct observation of ligand migration within human hemoglobin at work.

Authors:  Naoya Shibayama; Ayana Sato-Tomita; Mio Ohki; Kouhei Ichiyanagi; Sam-Yong Park
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-18       Impact factor: 11.205

9.  Interaction of human hemoglobin and semi-hemoglobins with the Staphylococcus aureus hemophore IsdB: a kinetic and mechanistic insight.

Authors:  Eleonora Gianquinto; Ilaria Moscetti; Omar De Bei; Barbara Campanini; Marialaura Marchetti; F Javier Luque; Salvatore Cannistraro; Luca Ronda; Anna Rita Bizzarri; Francesca Spyrakis; Stefano Bettati
Journal:  Sci Rep       Date:  2019-12-09       Impact factor: 4.379

  9 in total

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