Literature DB >> 10531523

New processing tools for weak and/or spatially overlapped macromolecular diffraction patterns.

D Bourgeois1.   

Abstract

Tools originally developed for the treatment of weak and/or spatially overlapped time-resolved Laue patterns were extended to improve the processing of difficult monochromatic data sets. The integration program PrOW allows deconvolution of spatially overlapped spots which are usually rejected by standard packages. By using dynamically adjusted profile-fitting areas, a carefully built library of reference spots and interpolation of reference profiles, this program also provides a more accurate evaluation of weak spots. In addition, by using Wilson statistics, it allows rejection of non-redundant strong outliers such as zingers, which otherwise may badly corrupt the data. A weighting method for optimizing structure-factor amplitude differences, based on Bayesian statistics and originally applied to low signal-to-noise ratio time-resolved Laue data, is also shown to significantly improve other types of subtle amplitude differences, such as anomalous differences.

Mesh:

Substances:

Year:  1999        PMID: 10531523     DOI: 10.1107/s0907444999008355

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

Review 1.  Time-resolved x-ray crystallography of heme proteins.

Authors:  Vukica Srajer; William E Royer
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

2.  Crystal structures of alfalfa caffeoyl coenzyme A 3-O-methyltransferase.

Authors:  Jean-Luc Ferrer; Chloe Zubieta; Richard A Dixon; Joseph P Noel
Journal:  Plant Physiol       Date:  2005-02-25       Impact factor: 8.340

3.  Crystallization and preliminary crystallographic study of the yeast Malassezia sympodialis allergen Mala s 1.

Authors:  Monica Vilhelmsson; B Martin Hallberg; Omid Rasool; Arezou Zargari; Annika Scheynius; Adnane Achour
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-01-27

4.  Real-time tracking of CO migration and binding in the α and β subunits of human hemoglobin via 150-ps time-resolved Laue crystallography.

Authors:  Friedrich Schotte; Hyun Sun Cho; Jayashree Soman; Michael Wulff; John S Olson; Philip A Anfinrud
Journal:  Chem Phys       Date:  2013-08-30       Impact factor: 2.348

5.  Autoindexing the diffraction patterns from crystals with a pseudotranslation.

Authors:  Nicholas K Sauter; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-05-15

6.  Imperfect pseudo-merohedral twinning in crystals of fungal fatty acid synthase.

Authors:  Simon Jenni; Nenad Ban
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.