Literature DB >> 24827529

Identification of human DNA in forensic evidence by loop-mediated isothermal amplification combined with a colorimetric gold nanoparticle hybridization probe.

Khanistha Watthanapanpituck1, Wansika Kiatpathomchai, Eric Chu, Nathinee Panvisavas.   

Abstract

A DNA test based on loop-mediated isothermal amplification (LAMP) and colorimetric gold nanoparticle (AuNP) hybridization probe to detect the presence of human DNA in forensic evidence was developed. The LAMP primer set targeted eight regions of the human cytochrome b, and its specificity was verified against the DNA of 11 animal species, which included animals closely related to humans, such as chimpanzee and orangutan. By using the AuNP probe, sequence-specific LAMP product could be detected and the test result could be visualized through the change in color. The limit of detection was demonstrated with reproducibility to be as low as 718 fg of genomic DNA, which is equivalent to approximately 100 plasmid DNA copies containing the cytochrome b DNA target region. A simple DNA extraction method for the commonly found forensic biological samples was also devised to streamline the test process. This LAMP-AuNP human DNA test showed to be a robust, specific, and cost-effective tool for the forensic identification of human specimens without requiring sophisticated laboratory instruments.

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Year:  2014        PMID: 24827529     DOI: 10.1007/s00414-014-1018-9

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  20 in total

1.  Species identification by means of the cytochrome b gene.

Authors:  W Parson; K Pegoraro; H Niederstätter; M Föger; M Steinlechner
Journal:  Int J Legal Med       Date:  2000       Impact factor: 2.686

2.  Multiplex amplification of mitochondrial DNA for human and species identification in forensic evaluation.

Authors:  M Bataille; K Crainic; M Leterreux; M Durigon; P de Mazancourt
Journal:  Forensic Sci Int       Date:  1999-01-25       Impact factor: 2.395

3.  Accelerated reaction by loop-mediated isothermal amplification using loop primers.

Authors:  K Nagamine; T Hase; T Notomi
Journal:  Mol Cell Probes       Date:  2002-06       Impact factor: 2.365

4.  Unresolved molecular phylogenies of gibbons and siamangs (Family: Hylobatidae) based on mitochondrial, Y-linked, and X-linked loci indicate a rapid Miocene radiation or sudden vicariance event.

Authors:  H Israfil; S M Zehr; A R Mootnick; M Ruvolo; M E Steiper
Journal:  Mol Phylogenet Evol       Date:  2010-11-11       Impact factor: 4.286

Review 5.  Gold nanoparticle probes for the detection of nucleic acid targets.

Authors:  C Shad Thaxton; Dimitra G Georganopoulou; Chad A Mirkin
Journal:  Clin Chim Acta       Date:  2005-10-07       Impact factor: 3.786

6.  Identification of DNA of human origin based on amplification of human-specific mitochondrial cytochrome b region.

Authors:  Hirokazu Matsuda; Yasuhisa Seo; Eiji Kakizaki; Shuji Kozawa; Eri Muraoka; Nobuhiro Yukawa
Journal:  Forensic Sci Int       Date:  2005-09-10       Impact factor: 2.395

7.  Colorimetric detection of eukaryotic gene expression with DNA-derivatized gold nanoparticles.

Authors:  Pedro Baptista; Gonçalo Doria; David Henriques; Eulália Pereira; Ricardo Franco
Journal:  J Biotechnol       Date:  2005-09-23       Impact factor: 3.307

8.  Rapid, simple alkaline extraction of human genomic DNA from whole blood, buccal epithelial cells, semen and forensic stains for PCR.

Authors:  L Rudbeck; J Dissing
Journal:  Biotechniques       Date:  1998-10       Impact factor: 1.993

9.  Two universal primer sets for species identification among vertebrates.

Authors:  Takashi Kitano; Kazuo Umetsu; Wei Tian; Motoki Osawa
Journal:  Int J Legal Med       Date:  2006-07-15       Impact factor: 2.686

10.  Evaluation of a loop-mediated isothermal amplification method using fecal specimens for differential detection of Taenia species from humans.

Authors:  Agathe Nkouawa; Yasuhito Sako; Tiaoying Li; Xingwang Chen; Toni Wandra; I Kadek Swastika; Minoru Nakao; Tetsuya Yanagida; Kazuhiro Nakaya; Dongchuan Qiu; Akira Ito
Journal:  J Clin Microbiol       Date:  2010-07-14       Impact factor: 5.948

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  7 in total

1.  A novel application of real-time RT-LAMP for body fluid identification: using HBB detection as the model.

Authors:  Chih-Wen Su; Chiao-Yun Li; James Chun-I Lee; Dar-Der Ji; Shu-Ying Li; Barbara Daniel; Denise Syndercombe-Court; Adrian Linacre; Hsing-Mei Hsieh
Journal:  Forensic Sci Med Pathol       Date:  2015-04-16       Impact factor: 2.007

2.  Bony injuries in homicide cases (1994-2014). A retrospective study.

Authors:  Alexander Flieger; Sarah C Kölzer; Stefanie Plenzig; Sara Heinbuch; Mattias Kettner; Frank Ramsthaler; Marcel A Verhoff
Journal:  Int J Legal Med       Date:  2016-07-11       Impact factor: 2.686

3.  The detection and identification of saliva in forensic samples by RT-LAMP.

Authors:  Li-Chin Tsai; Chih-Wen Su; James Chun-I Lee; Yu-Sheng Lu; Hsuan-Chen Chen; Yu-Chih Lin; Adrian Linacre; Hsing-Mei Hsieh
Journal:  Forensic Sci Med Pathol       Date:  2018-07-30       Impact factor: 2.007

4.  Development of uracil-DNA-glycosylase-supplemented loop-mediated isothermal amplification coupled with nanogold probe (UDG-LAMP-AuNP) for specific detection of Pseudomonas aeruginosa.

Authors:  Orapan Manajit; Siwaporn Longyant; Paisarn Sithigorngul; Parin Chaivisuthangkura
Journal:  Mol Med Rep       Date:  2018-02-02       Impact factor: 2.952

5.  Reduced False Positives and Improved Reporting of Loop-Mediated Isothermal Amplification using Quenched Fluorescent Primers.

Authors:  Patrick Hardinge; James A H Murray
Journal:  Sci Rep       Date:  2019-05-14       Impact factor: 4.379

Review 6.  Microfluidic Devices for Forensic DNA Analysis: A Review.

Authors:  Brigitte Bruijns; Arian van Asten; Roald Tiggelaar; Han Gardeniers
Journal:  Biosensors (Basel)       Date:  2016-08-05

Review 7.  Advanced DNA-Based Point-of-Care Diagnostic Methods for Plant Diseases Detection.

Authors:  Han Yih Lau; Jose R Botella
Journal:  Front Plant Sci       Date:  2017-12-06       Impact factor: 5.753

  7 in total

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