Literature DB >> 16845543

Two universal primer sets for species identification among vertebrates.

Takashi Kitano1, Kazuo Umetsu, Wei Tian, Motoki Osawa.   

Abstract

The aim of this study was to develop a simple method using universal primers for species identification based on direct PCR sequencing. Two primer sets were designed based on the conserved regions of the 12S and 16S rRNA loci detected by the comprehensive sequence comparison among 30 mammalian whole mitochondrial genomes. In humans, the expected sizes of PCR products of the 12S and 16S rRNAs were 215 and 244 bp, respectively. Both primer sets successfully amplified the expected PCR products from various kinds of vertebrates including mammals, birds, reptiles, amphibians, and fish, and the sequenced segments contained sufficient nucleotide differences to identify each animal species. A case example of the identification of a piece of buried bone of unknown species is presented, and the species was identified as a pig by this method.

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Year:  2006        PMID: 16845543     DOI: 10.1007/s00414-006-0113-y

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  14 in total

1.  Species identification by means of the cytochrome b gene.

Authors:  W Parson; K Pegoraro; H Niederstätter; M Föger; M Steinlechner
Journal:  Int J Legal Med       Date:  2000       Impact factor: 2.686

2.  Multiplex amplification of mitochondrial DNA for human and species identification in forensic evaluation.

Authors:  M Bataille; K Crainic; M Leterreux; M Durigon; P de Mazancourt
Journal:  Forensic Sci Int       Date:  1999-01-25       Impact factor: 2.395

3.  Validation of cytochrome b sequence analysis as a method of species identification.

Authors:  Wojciech Branicki; Tomasz Kupiec; Ryszard Pawlowski
Journal:  J Forensic Sci       Date:  2003-01       Impact factor: 1.832

4.  A simple method for domestic animal identification in Argentina using PCR-RFLP analysis of cytochrome b gene.

Authors:  Claudio M Bravi; Juan P Lirón; Patricia M Mirol; María V Ripoli; Pilar Peral-García; Guillermo Giovambattista
Journal:  Leg Med (Tokyo)       Date:  2004-10       Impact factor: 1.376

5.  Species identification by means of pyrosequencing the mitochondrial 12S rRNA gene.

Authors:  B Balitzki-Korte; K Anslinger; C Bartsch; B Rolf
Journal:  Int J Legal Med       Date:  2005-05-04       Impact factor: 2.686

6.  Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers.

Authors:  T D Kocher; W K Thomas; A Meyer; S V Edwards; S Pääbo; F X Villablanca; A C Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  1989-08       Impact factor: 11.205

7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

8.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

9.  Cytochrome b gene for species identification of the conservation animals.

Authors:  H M Hsieh; H L Chiang; L C Tsai; S Y Lai; N E Huang; A Linacre; J C Lee
Journal:  Forensic Sci Int       Date:  2001-10-15       Impact factor: 2.395

10.  Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules.

Authors:  M S Springer; E Douzery
Journal:  J Mol Evol       Date:  1996-10       Impact factor: 2.395

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  65 in total

Review 1.  DNA typing in wildlife crime: recent developments in species identification.

Authors:  Shanan S Tobe; Adrian Linacre
Journal:  Forensic Sci Med Pathol       Date:  2010-06-05       Impact factor: 2.007

2.  Forensic species identification based on size variation of mitochondrial DNA hypervariable regions.

Authors:  Hiroaki Nakamura; Tomonori Muro; Shinji Imamura; Isao Yuasa
Journal:  Int J Legal Med       Date:  2008-12-04       Impact factor: 2.686

3.  Reovirus-associated meningoencephalomyelitis in baboons.

Authors:  S Kumar; E J Dick; Y R Bommineni; A Yang; J Mubiru; G B Hubbard; M A Owston
Journal:  Vet Pathol       Date:  2013-07-26       Impact factor: 2.221

4.  Correlation between presence of Trypanosoma cruzi DNA in heart tissue of baboons and cynomolgus monkeys, and lymphocytic myocarditis.

Authors:  James N Mubiru; Alice Yang; Edward J Dick; Michael Owston; R Mark Sharp; Jane F VandeBerg; Robert E Shade; John L VandeBerg
Journal:  Am J Trop Med Hyg       Date:  2014-02-24       Impact factor: 2.345

Review 5.  Microbiomes in forensic botany: a review.

Authors:  Sarah Ishak; Eleanor Dormontt; Jennifer M Young
Journal:  Forensic Sci Med Pathol       Date:  2021-04-08       Impact factor: 2.007

6.  Detection of Toxoplasma gondii in faeces of privately owned cats using two PCR assays targeting the B1 gene and the 529-bp repetitive element.

Authors:  Fabrizia Veronesi; Azzurra Santoro; Giovanni L Milardi; Manuela Diaferia; Giulia Morganti; David Ranucci; Simona Gabrielli
Journal:  Parasitol Res       Date:  2017-01-27       Impact factor: 2.289

7.  Green fluorescent protein alters the transcriptional regulation of human mitochondrial genes after gamma irradiation.

Authors:  Winnie Wai-Ying Kam; Ryan Middleton; Vanessa Lake; Richard B Banati
Journal:  J Fluoresc       Date:  2013-03-09       Impact factor: 2.217

8.  Establishment of a molecular tool for blood meal identification in Malaysia.

Authors:  Ernieenor Faraliana Che Lah; Mariana Ahamad; Mohd Subail Haron; Ho Tze Ming
Journal:  Asian Pac J Trop Biomed       Date:  2012-03

9.  Blood feeding patterns of potential arbovirus vectors of the genus culex targeting ectothermic hosts.

Authors:  Nathan D Burkett-Cadena; Sean P Graham; Hassan K Hassan; Craig Guyer; Micky D Eubanks; Charles R Katholi; Thomas R Unnasch
Journal:  Am J Trop Med Hyg       Date:  2008-11       Impact factor: 2.345

10.  Forensic hair analysis to identify animal species on a case of pet animal abuse.

Authors:  Itaru Sato; Shinichi Nakaki; Koichi Murata; Hiroshi Takeshita; Toshiji Mukai
Journal:  Int J Legal Med       Date:  2009-11-18       Impact factor: 2.686

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