Literature DB >> 24826188

(4-Methyl-piperazin-1-yl)(2,3,4-tri-meth-oxy-benzyl-idene)amine.

Channappa N Kavitha1, Jerry P Jasinski2, Manpreet Kaur1, H S Yathirajan1.   

Abstract

In the title compound, C15H23N3O3, the piperazine ring is in a slightly distorted chair conformation and is twisted from the mean plane of the benzene ring making a dihedral angle of 14.94 (6)°. The 4-meth-oxy substituent is almost co-planar with the benzene ring [C-C-O-C torsion angle = 5.4 (1)°], while the meth-oxy groups at positions 2 and 3 [C-C-O-C torsion angles of 122.6 (4) and -66.1 (4)°, respectively] are twisted away from the mean plane of the benzene ring in anti-clinical and synclinical conformations, respectively. No classical hydrogen bonds or any weak inter-molecular inter-actions are observed in the crystal structure.

Entities:  

Year:  2014        PMID: 24826188      PMCID: PMC3998554          DOI: 10.1107/S1600536814006291

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review of pharmacological and toxicological information for piperazine derivatives, see: Elliott (2011 ▶). For the anti­microbial activity of Schiff base piperazine derivatives, see: Savaliya et al. (2010 ▶) and for their anti­bacterial activity, see: Xu et al. (2012 ▶). For the anti­microbial activity of piperazine derivatives, see: Kharb et al. (2012 ▶). For related structures, see: Kavitha et al. (2013a ▶,b ▶); Guo (2007 ▶); Guo & Qiu (2007 ▶); Xu et al. (2009 ▶); Zhou et al. (2011 ▶). For puckering parameters, see Cremer & Pople (1975 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C15H23N3O3 M = 293.36 Orthorhombic, a = 7.84207 (14) Å b = 14.2305 (3) Å c = 27.6218 (5) Å V = 3082.49 (10) Å3 Z = 8 Cu Kα radiation μ = 0.73 mm−1 T = 173 K 0.30 × 0.26 × 0.18 mm

Data collection

Agilent Xcalibur (Eos, Gemini) diffractometer Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012 ▶) T min = 0.290, T max = 1.000 19693 measured reflections 2978 independent reflections 2643 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.113 S = 1.04 2978 reflections 195 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814006291/hg5389sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006291/hg5389Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006291/hg5389Isup3.cml CCDC reference: 992877 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H23N3O3Dx = 1.264 Mg m3
Mr = 293.36Cu Kα radiation, λ = 1.54184 Å
Orthorhombic, PbcaCell parameters from 8346 reflections
a = 7.84207 (14) Åθ = 4.5–71.5°
b = 14.2305 (3) ŵ = 0.73 mm1
c = 27.6218 (5) ÅT = 173 K
V = 3082.49 (10) Å3Irregular, colourless
Z = 80.30 × 0.26 × 0.18 mm
F(000) = 1264
Agilent Xcalibur (Eos, Gemini) diffractometer2978 independent reflections
Radiation source: Enhance (Cu) X-ray Source2643 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.051
ω scansθmax = 71.3°, θmin = 3.2°
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012)h = −9→9
Tmin = 0.290, Tmax = 1.000k = −14→17
19693 measured reflectionsl = −33→33
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.040w = 1/[σ2(Fo2) + (0.0679P)2 + 0.5881P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.113(Δ/σ)max = 0.001
S = 1.04Δρmax = 0.23 e Å3
2978 reflectionsΔρmin = −0.17 e Å3
195 parametersExtinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.00092 (14)
Primary atom site location: structure-invariant direct methods
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O10.29270 (12)0.40317 (7)0.53704 (3)0.0368 (2)
O20.27459 (11)0.21257 (6)0.51816 (3)0.0335 (2)
O30.44344 (12)0.08844 (6)0.57497 (3)0.0352 (2)
N10.44972 (15)0.77433 (8)0.70944 (4)0.0362 (3)
N20.54792 (13)0.60211 (7)0.66430 (4)0.0295 (2)
N30.54620 (13)0.50677 (7)0.65387 (4)0.0302 (2)
C10.44272 (17)0.76304 (9)0.65706 (5)0.0357 (3)
H1A0.54840.78540.64290.043*
H1B0.35030.80080.64420.043*
C20.41546 (17)0.66106 (9)0.64310 (5)0.0353 (3)
H2A0.30450.64040.65440.042*
H2B0.41790.65500.60810.042*
C30.56104 (18)0.61506 (9)0.71668 (5)0.0351 (3)
H3A0.65550.57820.72910.042*
H3B0.45730.59310.73210.042*
C40.58872 (19)0.71782 (10)0.72874 (5)0.0372 (3)
H4A0.59460.72570.76360.045*
H4B0.69600.73880.71500.045*
C50.46406 (15)0.47565 (9)0.61694 (4)0.0286 (3)
H50.40130.51650.59760.034*
C60.47012 (14)0.37502 (9)0.60550 (4)0.0279 (3)
C70.38193 (14)0.34008 (9)0.56495 (4)0.0276 (3)
C80.37692 (14)0.24401 (9)0.55517 (4)0.0278 (3)
C90.46380 (15)0.18119 (9)0.58557 (4)0.0285 (3)
C100.55834 (16)0.21556 (9)0.62441 (4)0.0318 (3)
H100.62070.17460.64380.038*
C110.55890 (16)0.31101 (9)0.63400 (4)0.0309 (3)
H110.62070.33310.66040.037*
C120.4689 (2)0.87309 (11)0.72222 (6)0.0494 (4)
H12A0.57110.89740.70780.074*
H12B0.47570.87920.75680.074*
H12C0.37240.90780.71050.074*
C130.3389 (2)0.40626 (11)0.48695 (5)0.0441 (3)
H13A0.27570.35940.46950.066*
H13B0.45880.39410.48370.066*
H13C0.31320.46730.47410.066*
C140.36197 (19)0.16466 (11)0.47953 (5)0.0398 (3)
H14A0.28700.15860.45220.060*
H14B0.39620.10340.49030.060*
H14C0.46100.20010.47030.060*
C150.51186 (19)0.02173 (9)0.60812 (5)0.0400 (3)
H15A0.4813−0.04050.59800.060*
H15B0.46660.03330.63990.060*
H15C0.63380.02740.60890.060*
U11U22U33U12U13U23
O10.0377 (5)0.0364 (5)0.0363 (5)0.0096 (4)−0.0095 (4)−0.0018 (4)
O20.0263 (4)0.0382 (5)0.0360 (5)0.0000 (3)−0.0049 (3)−0.0069 (4)
O30.0389 (5)0.0280 (5)0.0388 (5)−0.0006 (4)−0.0020 (4)0.0006 (4)
N10.0396 (6)0.0337 (6)0.0353 (6)−0.0016 (4)0.0053 (4)−0.0043 (5)
N20.0288 (5)0.0294 (5)0.0303 (5)−0.0002 (4)−0.0043 (4)−0.0007 (4)
N30.0277 (5)0.0297 (5)0.0331 (5)−0.0011 (4)−0.0009 (4)−0.0004 (4)
C10.0374 (7)0.0333 (7)0.0366 (7)0.0029 (5)−0.0056 (5)−0.0002 (5)
C20.0347 (6)0.0356 (7)0.0355 (6)0.0017 (5)−0.0098 (5)−0.0020 (5)
C30.0395 (7)0.0360 (7)0.0298 (6)−0.0035 (5)−0.0063 (5)0.0019 (5)
C40.0438 (7)0.0399 (7)0.0278 (6)−0.0075 (6)−0.0038 (5)−0.0022 (5)
C50.0250 (6)0.0323 (6)0.0286 (6)0.0000 (5)0.0003 (4)0.0007 (5)
C60.0234 (5)0.0328 (6)0.0276 (6)−0.0008 (4)0.0031 (4)−0.0001 (5)
C70.0220 (5)0.0323 (6)0.0285 (6)0.0021 (4)0.0015 (4)0.0016 (5)
C80.0213 (5)0.0352 (7)0.0269 (6)−0.0012 (4)0.0015 (4)−0.0022 (5)
C90.0260 (6)0.0293 (6)0.0300 (6)−0.0006 (4)0.0045 (4)−0.0010 (5)
C100.0322 (6)0.0335 (7)0.0297 (6)0.0031 (5)−0.0026 (5)0.0040 (5)
C110.0297 (6)0.0363 (7)0.0267 (6)−0.0005 (5)−0.0022 (4)−0.0017 (5)
C120.0702 (11)0.0380 (8)0.0400 (8)−0.0030 (7)0.0069 (7)−0.0063 (6)
C130.0510 (8)0.0443 (8)0.0370 (7)0.0011 (6)−0.0104 (6)0.0083 (6)
C140.0409 (7)0.0442 (8)0.0343 (7)0.0017 (6)−0.0051 (5)−0.0104 (6)
C150.0428 (7)0.0310 (7)0.0462 (8)0.0045 (6)−0.0006 (6)0.0029 (6)
O1—C71.3747 (15)C5—H50.9300
O1—C131.4308 (17)C5—C61.4673 (17)
O2—C81.3745 (14)C6—C71.4071 (17)
O2—C141.4397 (16)C6—C111.3908 (18)
O3—C91.3614 (15)C7—C81.3941 (18)
O3—C151.4239 (16)C8—C91.4032 (18)
N1—C11.4570 (17)C9—C101.3928 (18)
N1—C41.4556 (19)C10—H100.9300
N1—C121.4567 (18)C10—C111.3838 (18)
N2—N31.3871 (14)C11—H110.9300
N2—C21.4579 (16)C12—H12A0.9600
N2—C31.4623 (16)C12—H12B0.9600
N3—C51.2852 (16)C12—H12C0.9600
C1—H1A0.9700C13—H13A0.9600
C1—H1B0.9700C13—H13B0.9600
C1—C21.5167 (18)C13—H13C0.9600
C2—H2A0.9700C14—H14A0.9600
C2—H2B0.9700C14—H14B0.9600
C3—H3A0.9700C14—H14C0.9600
C3—H3B0.9700C15—H15A0.9600
C3—C41.5154 (18)C15—H15B0.9600
C4—H4A0.9700C15—H15C0.9600
C4—H4B0.9700
C7—O1—C13115.69 (10)O1—C7—C6117.76 (11)
C8—O2—C14115.31 (10)O1—C7—C8121.16 (11)
C9—O3—C15117.64 (10)C8—C7—C6120.97 (11)
C4—N1—C1109.32 (10)O2—C8—C7118.68 (11)
C4—N1—C12111.54 (12)O2—C8—C9121.42 (11)
C12—N1—C1110.54 (11)C7—C8—C9119.68 (11)
N3—N2—C2118.20 (10)O3—C9—C8115.60 (11)
N3—N2—C3109.23 (10)O3—C9—C10124.65 (11)
C2—N2—C3112.02 (10)C10—C9—C8119.72 (11)
C5—N3—N2120.44 (11)C9—C10—H10120.2
N1—C1—H1A109.4C11—C10—C9119.59 (11)
N1—C1—H1B109.4C11—C10—H10120.2
N1—C1—C2111.30 (11)C6—C11—H11118.9
H1A—C1—H1B108.0C10—C11—C6122.20 (11)
C2—C1—H1A109.4C10—C11—H11118.9
C2—C1—H1B109.4N1—C12—H12A109.5
N2—C2—C1110.37 (10)N1—C12—H12B109.5
N2—C2—H2A109.6N1—C12—H12C109.5
N2—C2—H2B109.6H12A—C12—H12B109.5
C1—C2—H2A109.6H12A—C12—H12C109.5
C1—C2—H2B109.6H12B—C12—H12C109.5
H2A—C2—H2B108.1O1—C13—H13A109.5
N2—C3—H3A109.6O1—C13—H13B109.5
N2—C3—H3B109.6O1—C13—H13C109.5
N2—C3—C4110.43 (10)H13A—C13—H13B109.5
H3A—C3—H3B108.1H13A—C13—H13C109.5
C4—C3—H3A109.6H13B—C13—H13C109.5
C4—C3—H3B109.6O2—C14—H14A109.5
N1—C4—C3110.21 (11)O2—C14—H14B109.5
N1—C4—H4A109.6O2—C14—H14C109.5
N1—C4—H4B109.6H14A—C14—H14B109.5
C3—C4—H4A109.6H14A—C14—H14C109.5
C3—C4—H4B109.6H14B—C14—H14C109.5
H4A—C4—H4B108.1O3—C15—H15A109.5
N3—C5—H5120.3O3—C15—H15B109.5
N3—C5—C6119.41 (11)O3—C15—H15C109.5
C6—C5—H5120.3H15A—C15—H15B109.5
C7—C6—C5120.03 (11)H15A—C15—H15C109.5
C11—C6—C5122.24 (11)H15B—C15—H15C109.5
C11—C6—C7117.73 (11)
O1—C7—C8—O2−2.82 (16)C5—C6—C7—C8−175.85 (10)
O1—C7—C8—C9−177.37 (10)C5—C6—C11—C10177.07 (11)
O2—C8—C9—O31.80 (16)C6—C7—C8—O2173.26 (10)
O2—C8—C9—C10−176.27 (11)C6—C7—C8—C9−1.30 (16)
O3—C9—C10—C11−174.78 (11)C7—C6—C11—C10−1.90 (18)
N1—C1—C2—N2−55.98 (15)C7—C8—C9—O3176.20 (10)
N2—N3—C5—C6177.42 (10)C7—C8—C9—C10−1.88 (17)
N2—C3—C4—N158.01 (14)C8—C9—C10—C113.11 (18)
N3—N2—C2—C1−177.82 (10)C9—C10—C11—C6−1.20 (19)
N3—N2—C3—C4171.89 (10)C11—C6—C7—O1179.34 (10)
N3—C5—C6—C7−179.49 (11)C11—C6—C7—C83.14 (17)
N3—C5—C6—C111.57 (18)C12—N1—C1—C2−177.65 (12)
C1—N1—C4—C3−59.88 (14)C12—N1—C4—C3177.56 (11)
C2—N2—N3—C519.32 (17)C13—O1—C7—C6122.85 (12)
C2—N2—C3—C4−55.19 (14)C13—O1—C7—C8−60.96 (15)
C3—N2—N3—C5148.93 (11)C14—O2—C8—C7119.41 (12)
C3—N2—C2—C153.86 (14)C14—O2—C8—C9−66.14 (15)
C4—N1—C1—C259.20 (14)C15—O3—C9—C8−172.57 (11)
C5—C6—C7—O10.35 (16)C15—O3—C9—C105.40 (17)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Current awareness of piperazines: pharmacology and toxicology.

Authors:  Simon Elliott
Journal:  Drug Test Anal       Date:  2011-07-11       Impact factor: 3.345

3.  1,4-Bis{3-[4-(dimethyl-amino)benzyl-ideneamino]prop-yl}piperazine.

Authors:  Rui-Bo Xu; Xing-You Xu; Da-Qi Wang; Xu-Jie Yang; Shuan Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

4.  2-Meth-oxy-4-[(4-methyl-piperazin-1-yl)imino-meth-yl]phenol.

Authors:  Li-Na Zhou; Long Yan; Hui-Liang Zhou; Qing-Feng Yang; Qi-Lin Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

5.  N-(1H-Indol-3-yl-methyl-idene)-4-methyl-piperazin-1-amine.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Brian J Anderson; H S Yathirajan; Manpreet Kaur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-26

6.  4-Methyl-N-(4-nitro-benzyl-idene)piperazin-1-amine.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Brian J Anderson; H S Yathirajan; Manpreet Kaur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23
  6 in total

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