Literature DB >> 24454132

N-(1H-Indol-3-yl-methyl-idene)-4-methyl-piperazin-1-amine.

Channappa N Kavitha1, Jerry P Jasinski2, Brian J Anderson2, H S Yathirajan1, Manpreet Kaur1.   

Abstract

In the title compound, C14H18N4, the piperazine ring is in a slightly distorted chair conformation. The indole ring system is twisted from the piperazine ring, making a dihedral angle of 7.27 (11)°. In the crystal, N-H⋯N hydrogen bonds link mol-ecules into chains along [10-1].

Entities:  

Year:  2013        PMID: 24454132      PMCID: PMC3884356          DOI: 10.1107/S1600536813028523

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a review of the current pharmacological and toxicological information for piperazine, see: Elliott (2011 ▶). For the biological activity of Schiff base ligands, see: Kharb et al. (2012 ▶); Savaliya et al. (2010 ▶); Xu et al. (2012 ▶). For related structures, see: Guo (2007 ▶); Ming-Lin et al. (2007 ▶); Xu et al. (2009 ▶); Zhou et al. (2011 ▶). For puckering parameters, see Cremer & Pople (1975 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C14H18N4 M = 242.32 Monoclinic, a = 7.5630 (5) Å b = 6.5593 (4) Å c = 13.2319 (9) Å β = 100.072 (6)° V = 646.29 (7) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.48 × 0.33 × 0.18 mm

Data collection

Agilent Gemini Eos diffractometer Absorption correction: multi-scan CrysAlis PRO and CrysAlis RED, Agilent (2012 ▶). T min = 0.868, T max = 1.000 7074 measured reflections 3857 independent reflections 3214 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.163 S = 1.06 3857 reflections 165 parameters 2 restraints H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.31 e Å−3 Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012 ▶); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813028523/hg5354sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813028523/hg5354Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813028523/hg5354Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H18N4F(000) = 260
Mr = 242.32Dx = 1.245 Mg m3
Monoclinic, PnMo Kα radiation, λ = 0.71073 Å
a = 7.5630 (5) ÅCell parameters from 2079 reflections
b = 6.5593 (4) Åθ = 3.4–33.0°
c = 13.2319 (9) ŵ = 0.08 mm1
β = 100.072 (6)°T = 173 K
V = 646.29 (7) Å3Irregular, yellow
Z = 20.48 × 0.33 × 0.18 mm
Agilent Gemini Eos diffractometer3857 independent reflections
Radiation source: Enhance (Mo) X-ray Source3214 reflections with I > 2σ(I)
Detector resolution: 16.0416 pixels mm-1Rint = 0.050
ω scansθmax = 33.1°, θmin = 3.4°
Absorption correction: multi-scan CrysAlis PRO and CrysAlis RED, Agilent (2012).h = −9→11
Tmin = 0.868, Tmax = 1.000k = −6→9
7074 measured reflectionsl = −19→19
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.058w = 1/[σ2(Fo2) + (0.0862P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.163(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.35 e Å3
3857 reflectionsΔρmin = −0.31 e Å3
165 parametersExtinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.027 (9)
Primary atom site location: iterative
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
N10.5403 (3)1.0302 (3)0.32552 (17)0.0256 (4)
N20.4353 (3)0.8708 (3)0.50758 (17)0.0256 (5)
N30.4539 (3)0.7746 (4)0.60330 (19)0.0283 (5)
N40.3483 (3)0.2381 (3)0.8128 (2)0.0289 (5)
H40.31680.11970.83550.035*
C10.5358 (4)1.1586 (4)0.4158 (2)0.0262 (5)
H1A0.41671.22480.40970.031*
H1B0.62791.26680.41960.031*
C20.5711 (3)1.0305 (4)0.5122 (2)0.0252 (5)
H2A0.69180.96780.51940.030*
H2B0.56861.11810.57280.030*
C30.4253 (4)0.7427 (4)0.4164 (2)0.0270 (5)
H3A0.32320.64700.41250.032*
H3B0.53690.66150.42140.032*
C40.4012 (3)0.8721 (4)0.3205 (2)0.0287 (5)
H4A0.40520.78340.26040.034*
H4B0.28160.93790.31080.034*
C50.4143 (4)0.5839 (4)0.6077 (2)0.0271 (5)
H50.38720.50750.54590.032*
C60.4101 (4)0.4842 (4)0.7047 (2)0.0268 (5)
C70.3487 (4)0.2858 (4)0.7119 (2)0.0276 (5)
H70.31250.19670.65550.033*
C80.4050 (3)0.4047 (4)0.8729 (2)0.0256 (5)
C90.4229 (4)0.4299 (5)0.9786 (2)0.0329 (6)
H90.39530.32241.02140.039*
C100.4827 (4)0.6176 (5)1.0192 (2)0.0368 (6)
H100.49460.63981.09100.044*
C110.5260 (4)0.7757 (5)0.9559 (2)0.0358 (7)
H110.56790.90230.98580.043*
C120.5083 (4)0.7494 (4)0.8510 (3)0.0302 (6)
H120.53770.85690.80880.036*
C130.4467 (3)0.5622 (4)0.8078 (2)0.0247 (5)
C140.5122 (4)1.1517 (5)0.2313 (2)0.0363 (7)
H14A0.39411.21730.22260.054*
H14B0.51791.06280.17240.054*
H14C0.60581.25630.23590.054*
U11U22U33U12U13U23
N10.0311 (10)0.0236 (10)0.0232 (10)0.0024 (9)0.0083 (8)0.0033 (8)
N20.0341 (11)0.0196 (9)0.0250 (11)−0.0007 (9)0.0107 (8)0.0011 (8)
N30.0346 (11)0.0256 (11)0.0272 (11)0.0005 (9)0.0121 (9)0.0022 (9)
N40.0360 (12)0.0201 (10)0.0321 (12)−0.0038 (9)0.0098 (9)0.0035 (9)
C10.0328 (12)0.0182 (10)0.0290 (13)0.0009 (10)0.0093 (10)0.0015 (10)
C20.0313 (12)0.0203 (11)0.0256 (13)−0.0021 (9)0.0098 (9)0.0002 (9)
C30.0328 (13)0.0219 (11)0.0269 (13)−0.0018 (10)0.0070 (10)−0.0010 (10)
C40.0314 (12)0.0290 (13)0.0257 (13)−0.0003 (10)0.0052 (10)−0.0005 (10)
C50.0332 (12)0.0232 (12)0.0271 (13)−0.0017 (10)0.0116 (10)−0.0002 (10)
C60.0300 (12)0.0224 (11)0.0301 (13)−0.0019 (9)0.0112 (9)0.0001 (10)
C70.0320 (12)0.0223 (11)0.0303 (14)−0.0016 (10)0.0101 (10)0.0002 (10)
C80.0258 (11)0.0207 (11)0.0303 (13)−0.0013 (10)0.0048 (9)0.0037 (10)
C90.0337 (13)0.0340 (14)0.0299 (14)−0.0037 (12)0.0026 (10)0.0072 (12)
C100.0375 (15)0.0410 (16)0.0299 (15)−0.0053 (13)0.0002 (11)0.0015 (12)
C110.0359 (15)0.0325 (14)0.0380 (17)−0.0076 (12)0.0040 (12)−0.0043 (12)
C120.0268 (11)0.0255 (12)0.0388 (15)−0.0048 (10)0.0072 (10)0.0011 (11)
C130.0217 (10)0.0215 (11)0.0318 (13)0.0004 (9)0.0073 (9)0.0048 (10)
C140.0454 (16)0.0343 (15)0.0293 (14)−0.0004 (13)0.0069 (12)0.0098 (12)
N1—C11.467 (3)C4—H4B0.9900
N1—C41.470 (3)C5—H50.9500
N1—C141.463 (4)C5—C61.446 (4)
N2—N31.400 (3)C6—C71.390 (4)
N2—C21.461 (3)C6—C131.438 (4)
N2—C31.462 (3)C7—H70.9500
N3—C51.289 (4)C8—C91.392 (4)
N4—H40.8800C8—C131.416 (4)
N4—C71.371 (4)C9—H90.9500
N4—C81.375 (4)C9—C101.387 (4)
C1—H1A0.9900C10—H100.9500
C1—H1B0.9900C10—C111.407 (5)
C1—C21.511 (4)C11—H110.9500
C2—H2A0.9900C11—C121.382 (4)
C2—H2B0.9900C12—H120.9500
C3—H3A0.9900C12—C131.399 (4)
C3—H3B0.9900C14—H14A0.9800
C3—C41.510 (4)C14—H14B0.9800
C4—H4A0.9900C14—H14C0.9800
C1—N1—C4108.8 (2)N3—C5—H5119.3
C14—N1—C1111.1 (2)N3—C5—C6121.3 (3)
C14—N1—C4110.5 (2)C6—C5—H5119.3
N3—N2—C2109.1 (2)C7—C6—C5122.9 (3)
N3—N2—C3118.0 (2)C7—C6—C13106.2 (2)
C2—N2—C3112.4 (2)C13—C6—C5130.6 (2)
C5—N3—N2119.4 (2)N4—C7—C6109.8 (2)
C7—N4—H4125.4N4—C7—H7125.1
C7—N4—C8109.1 (2)C6—C7—H7125.1
C8—N4—H4125.4N4—C8—C9129.9 (3)
N1—C1—H1A109.7N4—C8—C13108.0 (2)
N1—C1—H1B109.7C9—C8—C13122.1 (3)
N1—C1—C2110.0 (2)C8—C9—H9121.2
H1A—C1—H1B108.2C10—C9—C8117.6 (3)
C2—C1—H1A109.7C10—C9—H9121.2
C2—C1—H1B109.7C9—C10—H10119.4
N2—C2—C1110.1 (2)C9—C10—C11121.2 (3)
N2—C2—H2A109.6C11—C10—H10119.4
N2—C2—H2B109.6C10—C11—H11119.5
C1—C2—H2A109.6C12—C11—C10120.9 (3)
C1—C2—H2B109.6C12—C11—H11119.5
H2A—C2—H2B108.2C11—C12—H12120.4
N2—C3—H3A109.5C11—C12—C13119.1 (3)
N2—C3—H3B109.5C13—C12—H12120.4
N2—C3—C4110.6 (2)C8—C13—C6106.9 (2)
H3A—C3—H3B108.1C12—C13—C6134.0 (3)
C4—C3—H3A109.5C12—C13—C8119.1 (3)
C4—C3—H3B109.5N1—C14—H14A109.5
N1—C4—C3112.2 (2)N1—C14—H14B109.5
N1—C4—H4A109.2N1—C14—H14C109.5
N1—C4—H4B109.2H14A—C14—H14B109.5
C3—C4—H4A109.2H14A—C14—H14C109.5
C3—C4—H4B109.2H14B—C14—H14C109.5
H4A—C4—H4B107.9
N1—C1—C2—N2−59.6 (3)C5—C6—C13—C12−5.0 (5)
N2—N3—C5—C6−172.3 (2)C7—N4—C8—C9178.7 (3)
N2—C3—C4—N154.1 (3)C7—N4—C8—C13−1.3 (3)
N3—N2—C2—C1−171.0 (2)C7—C6—C13—C80.0 (3)
N3—N2—C3—C4178.7 (2)C7—C6—C13—C12−179.1 (3)
N3—C5—C6—C7172.6 (3)C8—N4—C7—C61.4 (3)
N3—C5—C6—C13−0.8 (4)C8—C9—C10—C11−0.9 (4)
N4—C8—C9—C10−179.5 (3)C9—C8—C13—C6−179.2 (2)
N4—C8—C13—C60.8 (3)C9—C8—C13—C120.1 (4)
N4—C8—C13—C12−179.9 (2)C9—C10—C11—C120.7 (5)
C1—N1—C4—C3−57.8 (3)C10—C11—C12—C13−0.1 (4)
C2—N2—N3—C5−148.2 (2)C11—C12—C13—C6178.8 (3)
C2—N2—C3—C4−53.0 (3)C11—C12—C13—C8−0.3 (4)
C3—N2—N3—C5−18.4 (3)C13—C6—C7—N4−0.9 (3)
C3—N2—C2—C156.1 (3)C13—C8—C9—C100.5 (4)
C4—N1—C1—C260.0 (3)C14—N1—C1—C2−178.1 (2)
C5—C6—C7—N4−175.6 (2)C14—N1—C4—C3179.9 (2)
C5—C6—C13—C8174.2 (3)
D—H···AD—HH···AD···AD—H···A
N4—H4···N1i0.882.292.947 (3)131
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4⋯N1i 0.882.292.947 (3)131

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Current awareness of piperazines: pharmacology and toxicology.

Authors:  Simon Elliott
Journal:  Drug Test Anal       Date:  2011-07-11       Impact factor: 3.345

3.  1,4-Bis{3-[4-(dimethyl-amino)benzyl-ideneamino]prop-yl}piperazine.

Authors:  Rui-Bo Xu; Xing-You Xu; Da-Qi Wang; Xu-Jie Yang; Shuan Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

4.  2-Meth-oxy-4-[(4-methyl-piperazin-1-yl)imino-meth-yl]phenol.

Authors:  Li-Na Zhou; Long Yan; Hui-Liang Zhou; Qing-Feng Yang; Qi-Lin Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11
  4 in total
  1 in total

1.  (4-Methyl-piperazin-1-yl)(2,3,4-tri-meth-oxy-benzyl-idene)amine.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Manpreet Kaur; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-29
  1 in total

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