Literature DB >> 21522614

2-Meth-oxy-4-[(4-methyl-piperazin-1-yl)imino-meth-yl]phenol.

Li-Na Zhou, Long Yan, Hui-Liang Zhou, Qing-Feng Yang, Qi-Lin Hu.   

Abstract

The title compound, C(13)H(19)N(3)O(2), was obtained by the direct solvent-free reaction of n class="Chemical">4-hy-droxy-3-meth-oxy-benzaldehyde with 1-amino-4-methyl-piperazine. The piperazine ring adopts a chair conformation. In the crystal, strong inter-molecular O-H⋯N and weak inter-molecular C-H⋯O and C-H⋯N hydrogen bonds help to establish the packing.

Entities:  

Year:  2010        PMID: 21522614      PMCID: PMC3050162          DOI: 10.1107/S1600536810051135

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of piperazine compounds, see: Obniska et al. (2005 ▶); Smid et al. (2005 ▶). For background and related structures, see: Guo (2004 ▶, 2007 ▶).

Experimental

Crystal data

C13H19N3O2 M = 249.31 Orthorhombic, a = 12.179 (2) Å b = 18.624 (3) Å c = 6.0187 (10) Å V = 1365.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.25 × 0.25 × 0.10 mm

Data collection

Siemens SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.642, T max = 0.745 7503 measured reflections 1582 independent reflections 1126 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.077 S = 1.01 1582 reflections 169 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 1999) ▶; software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810051135/im2254sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810051135/im2254Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19N3O2Dx = 1.213 Mg m3
Mr = 249.31Melting point: not measured K
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 1708 reflections
a = 12.179 (2) Åθ = 2.0–25.1°
b = 18.624 (3) ŵ = 0.08 mm1
c = 6.0187 (10) ÅT = 296 K
V = 1365.1 (4) Å3Club-shaped, colorless
Z = 40.25 × 0.25 × 0.10 mm
F(000) = 536
Siemens SMART CCD diffractometer1582 independent reflections
Radiation source: fine-focus sealed tube1126 reflections with I > 2σ(I)
graphiteRint = 0.043
Detector resolution: 9.00 cm pixels mm-1θmax = 26.7°, θmin = 2.0°
ω scansh = −15→14
Absorption correction: multi-scan (SADABS; Bruker, 2002)k = −23→21
Tmin = 0.642, Tmax = 0.745l = −7→6
7503 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.077w = 1/[σ2(Fo2) + (0.010P)2 + 0.480P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
1582 reflectionsΔρmax = 0.13 e Å3
169 parametersΔρmin = −0.13 e Å3
1 restraintExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0157 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.38591 (18)0.68018 (10)0.1639 (4)0.0597 (7)
H10.440 (3)0.6712 (18)0.271 (7)0.090*
O20.39131 (16)0.56755 (10)0.4468 (4)0.0563 (6)
N10.02060 (18)0.33961 (11)0.1024 (4)0.0441 (6)
N2−0.05455 (17)0.20217 (11)−0.0440 (5)0.0459 (6)
N30.09346 (17)0.39555 (11)0.1421 (5)0.0460 (6)
C10.3972 (3)0.50737 (15)0.5919 (6)0.0621 (9)
H1A0.32910.50250.67070.093*
H1B0.45600.51430.69610.093*
H1C0.41070.46470.50680.093*
C20.3147 (2)0.56473 (14)0.2784 (5)0.0406 (7)
C30.3161 (2)0.62428 (13)0.1367 (5)0.0433 (7)
C40.2429 (2)0.62631 (14)−0.0381 (6)0.0500 (7)
H40.24280.6656−0.13360.060*
C50.1695 (2)0.57068 (14)−0.0731 (6)0.0491 (8)
H50.12020.5733−0.19080.059*
C60.1687 (2)0.51122 (14)0.0650 (5)0.0429 (7)
C70.2418 (2)0.50933 (14)0.2442 (5)0.0439 (7)
H70.24120.47040.34080.053*
C80.0937 (2)0.45134 (14)0.0184 (6)0.0478 (8)
H8A0.04710.4551−0.11550.057*
C90.0658 (2)0.27338 (13)0.1924 (6)0.0517 (8)
H9A0.08870.28120.34490.062*
H9B0.12990.25940.10700.062*
C10−0.0186 (2)0.21406 (15)0.1845 (6)0.0518 (8)
H10A0.01290.17020.24350.062*
H10B−0.08120.22700.27590.062*
C11−0.1364 (2)0.14440 (14)−0.0515 (7)0.0655 (10)
H11A−0.10340.1003−0.00320.098*
H11B−0.16280.1390−0.20090.098*
H11C−0.19670.15620.04460.098*
C12−0.1020 (2)0.26857 (13)−0.1319 (6)0.0524 (9)
H12A−0.16670.2810−0.04610.063*
H12B−0.12470.2609−0.28450.063*
C13−0.0210 (2)0.33023 (15)−0.1233 (6)0.0500 (9)
H13A0.03980.3206−0.22330.060*
H13B−0.05670.3741−0.17180.060*
U11U22U33U12U13U23
O10.0704 (15)0.0501 (12)0.0588 (16)−0.0206 (11)−0.0153 (13)0.0126 (12)
O20.0664 (13)0.0492 (11)0.0535 (14)−0.0121 (10)−0.0184 (14)0.0125 (12)
N10.0432 (13)0.0371 (12)0.0519 (17)−0.0026 (10)−0.0032 (13)−0.0023 (12)
N20.0443 (12)0.0383 (12)0.0550 (17)−0.0042 (10)0.0015 (14)−0.0058 (14)
N30.0453 (13)0.0377 (12)0.0549 (17)−0.0026 (11)0.0025 (13)−0.0054 (13)
C10.075 (2)0.0572 (18)0.054 (2)0.0014 (16)−0.013 (2)0.0147 (18)
C20.0438 (16)0.0369 (15)0.0410 (17)0.0015 (12)−0.0031 (14)0.0023 (14)
C30.0462 (16)0.0365 (15)0.0473 (19)−0.0047 (12)−0.0008 (15)0.0041 (16)
C40.0592 (18)0.0406 (15)0.0502 (19)−0.0013 (14)−0.0062 (18)0.0078 (17)
C50.0479 (16)0.0477 (16)0.052 (2)0.0020 (14)−0.0128 (17)0.0035 (16)
C60.0377 (15)0.0378 (14)0.053 (2)0.0014 (12)−0.0004 (14)−0.0016 (14)
C70.0460 (16)0.0352 (14)0.051 (2)−0.0021 (13)−0.0013 (16)0.0065 (14)
C80.0420 (16)0.0428 (15)0.059 (2)0.0007 (13)−0.0032 (15)−0.0021 (15)
C90.0599 (18)0.0465 (16)0.049 (2)−0.0022 (14)−0.0068 (16)0.0026 (16)
C100.0581 (19)0.0421 (16)0.055 (2)−0.0050 (14)0.0064 (17)0.0006 (16)
C110.0586 (19)0.0456 (16)0.092 (3)−0.0088 (14)0.001 (2)−0.008 (2)
C120.0487 (17)0.0434 (16)0.065 (2)0.0024 (14)−0.0094 (15)−0.0078 (16)
C130.0531 (18)0.0421 (17)0.055 (2)0.0010 (14)−0.0105 (16)0.0010 (15)
O1—C31.354 (3)C5—C61.385 (4)
O1—H10.94 (4)C5—H50.9300
O2—C21.378 (3)C6—C71.399 (4)
O2—C11.423 (3)C6—C81.468 (4)
N1—N31.389 (3)C7—H70.9300
N1—C91.456 (3)C8—H8A0.9884
N1—C131.460 (4)C9—C101.510 (4)
N2—C101.460 (4)C9—H9A0.9700
N2—C121.464 (3)C9—H9B0.9700
N2—C111.468 (3)C10—H10A0.9700
N3—C81.278 (3)C10—H10B0.9700
C1—H1A0.9600C11—H11A0.9600
C1—H1B0.9600C11—H11B0.9600
C1—H1C0.9600C11—H11C0.9600
C2—C71.377 (4)C12—C131.515 (4)
C2—C31.399 (4)C12—H12A0.9700
C3—C41.380 (4)C12—H12B0.9700
C4—C51.384 (3)C13—H13A0.9700
C4—H40.9300C13—H13B0.9700
C3—O1—H1113 (2)N3—C8—C6120.5 (3)
C2—O2—C1117.1 (2)N3—C8—H8A122.1
N3—N1—C9109.2 (2)C6—C8—H8A117.3
N3—N1—C13118.1 (2)N1—C9—C10110.5 (2)
C9—N1—C13112.1 (2)N1—C9—H9A109.5
C10—N2—C12109.3 (2)C10—C9—H9A109.5
C10—N2—C11110.1 (3)N1—C9—H9B109.5
C12—N2—C11109.9 (2)C10—C9—H9B109.5
C8—N3—N1120.7 (2)H9A—C9—H9B108.1
O2—C1—H1A109.5N2—C10—C9110.2 (3)
O2—C1—H1B109.5N2—C10—H10A109.6
H1A—C1—H1B109.5C9—C10—H10A109.6
O2—C1—H1C109.5N2—C10—H10B109.6
H1A—C1—H1C109.5C9—C10—H10B109.6
H1B—C1—H1C109.5H10A—C10—H10B108.1
C7—C2—O2125.1 (3)N2—C11—H11A109.5
C7—C2—C3120.7 (3)N2—C11—H11B109.5
O2—C2—C3114.2 (2)H11A—C11—H11B109.5
O1—C3—C4118.5 (3)N2—C11—H11C109.5
O1—C3—C2122.9 (3)H11A—C11—H11C109.5
C4—C3—C2118.6 (2)H11B—C11—H11C109.5
C3—C4—C5120.9 (3)N2—C12—C13111.8 (2)
C3—C4—H4119.6N2—C12—H12A109.3
C5—C4—H4119.6C13—C12—H12A109.3
C4—C5—C6120.8 (3)N2—C12—H12B109.3
C4—C5—H5119.6C13—C12—H12B109.3
C6—C5—H5119.6H12A—C12—H12B107.9
C5—C6—C7118.6 (3)N1—C13—C12110.4 (3)
C5—C6—C8119.9 (3)N1—C13—H13A109.6
C7—C6—C8121.6 (3)C12—C13—H13A109.6
C2—C7—C6120.5 (3)N1—C13—H13B109.6
C2—C7—H7119.8C12—C13—H13B109.6
C6—C7—H7119.8H13A—C13—H13B108.1
C9—N1—N3—C8155.1 (3)C5—C6—C7—C2−1.6 (4)
C13—N1—N3—C825.5 (4)C8—C6—C7—C2177.0 (3)
C1—O2—C2—C72.0 (4)N1—N3—C8—C6178.2 (2)
C1—O2—C2—C3−177.6 (3)C5—C6—C8—N3178.7 (3)
C7—C2—C3—O1179.7 (3)C7—C6—C8—N30.1 (4)
O2—C2—C3—O1−0.7 (4)N3—N1—C9—C10171.1 (3)
C7—C2—C3—C40.0 (4)C13—N1—C9—C10−56.0 (3)
O2—C2—C3—C4179.6 (3)C12—N2—C10—C9−59.3 (3)
O1—C3—C4—C5−179.8 (3)C11—N2—C10—C9179.9 (2)
C2—C3—C4—C5−0.1 (4)N1—C9—C10—N258.7 (3)
C3—C4—C5—C6−0.7 (5)C10—N2—C12—C1358.0 (3)
C4—C5—C6—C71.5 (4)C11—N2—C12—C13178.9 (3)
C4—C5—C6—C8−177.1 (3)N3—N1—C13—C12−177.9 (2)
O2—C2—C7—C6−178.7 (3)C9—N1—C13—C1253.7 (3)
C3—C2—C7—C60.8 (4)N2—C12—C13—N1−54.9 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···N2i0.94 (4)1.88 (4)2.734 (3)151 (3)
C11—H11A···O2ii0.962.673.311 (4)125.
C5—H5···N1iii0.932.673.460 (4)143.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N2i0.94 (4)1.88 (4)2.734 (3)151 (3)
C11—H11A⋯O2ii0.962.673.311 (4)125
C5—H5⋯N1iii0.932.673.460 (4)143

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structure-activity relationships, and biological properties of 1-heteroaryl-4-[omega-(1H-indol-3-yl)alkyl]piperazines, novel potential antipsychotics combining potent dopamine D2 receptor antagonism with potent serotonin reuptake inhibition.

Authors:  Pieter Smid; Hein K A C Coolen; Hiskias G Keizer; Rolf van Hes; Jan-Peter de Moes; Arnold P den Hartog; Bob Stork; Rob H Plekkenpol; Leonarda C Niemann; Cees N J Stroomer; Martin Th M Tulp; Herman H van Stuivenberg; Andrew C McCreary; Mayke B Hesselink; Arnoud H J Herremans; Chris G Kruse
Journal:  J Med Chem       Date:  2005-11-03       Impact factor: 7.446

3.  Anticonvulsant properties of N-(4-methylpiperazin-1-yl)- and N-[3-(4-methyl-piperazin-1-yl)propyl] derivatives of 3-aryl- and 3-spirocycloalkyl-pyrrolidine-2,5-dione.

Authors:  Jolanta Obniska; Sławomir Jurczyk; Alfred Zejc; Krzysztof Kamiński; Ewa Tatarczyńska; Katarzyna Stachowicz
Journal:  Pharmacol Rep       Date:  2005 Mar-Apr       Impact factor: 3.024

  3 in total
  3 in total

1.  N-(1H-Indol-3-yl-methyl-idene)-4-methyl-piperazin-1-amine.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Brian J Anderson; H S Yathirajan; Manpreet Kaur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-26

2.  4-Methyl-N-(4-nitro-benzyl-idene)piperazin-1-amine.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Brian J Anderson; H S Yathirajan; Manpreet Kaur
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-23

3.  (4-Methyl-piperazin-1-yl)(2,3,4-tri-meth-oxy-benzyl-idene)amine.

Authors:  Channappa N Kavitha; Jerry P Jasinski; Manpreet Kaur; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-29
  3 in total

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