Literature DB >> 24826186

12-{[4-(4-Bromo-phen-yl)piperazin-1-yl]meth-yl}-9α-hy-droxy-4,8-dimethyl-3,14-dioxatri-cyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one.

Mohamed Loubidi1, Ahmed Benharref1, Lahcen El Ammari2, Mohamed Saadi2, Moha Berraho1.   

Abstract

The title compound, C25H33BrN2O4, was synthesized from 9α-hy-droxy-parthenolide (9α-hy-droxy-4,8-dimethyl-12-methylen-3,14-dioxa-tri-cyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one), which was isolated from the chloro-form extract of the aerial parts of Anvillea radiata. The mol-ecule is built up from two fused five- and ten-membered rings with an additional ep-oxy ring system and a bromo-phenyl-piperazine group as a substituent. The ten-membered ring adopts an approximate chair-chair-chair conformation, while the piperazine ring displays a chair conformation and the five-membered ring shows an envelope conformation with the C atom closest to the hy-droxy group forming the flap. An intra-molecular O-H⋯N hydrogen bond stabilizes the mol-ecular conformation. The crystal packing features C-H⋯O hydrogen bonds, which link the mol-ecules into zigzag chains running along the b-axis direction.

Entities:  

Year:  2014        PMID: 24826186      PMCID: PMC3998562          DOI: 10.1107/S1600536814006473

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the medicinal uses of the plant Anvillea radiata, see: Abdel Sattar et al. (1996 ▶); El Hassany et al. (2004 ▶); Qureshi et al. (1990 ▶). For the reactivity of this sesquiterpene, see: Neukirch et al. (2003 ▶); Hwang et al. (2006 ▶); Neelakantan et al. (2009 ▶). For the synthetic procedure, see: Moumou et al. (2010 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶)

Experimental

Crystal data

C25H33BrN2O4 M = 505.44 Monoclinic, a = 9.6790 (4) Å b = 7.0710 (3) Å c = 17.3117 (7) Å β = 94.872 (2)° V = 1180.54 (8) Å3 Z = 2 Mo Kα radiation μ = 1.78 mm−1 T = 296 K 0.5 × 0.03 × 0.03 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.634, T max = 0.746 14527 measured reflections 5899 independent reflections 5216 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.076 S = 1.03 5899 reflections 292 parameters 1 restraint H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.44 e Å−3 Absolute structure: Flack & Bernardinelli (2000 ▶), 2614 Friedel pairs Absolute structure parameter: 0.007 (5) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814006473/bt6970sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814006473/bt6970Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814006473/bt6970Isup3.cml CCDC reference: 993318 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H33BrN2O4F(000) = 528
Mr = 505.44Dx = 1.422 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 5899 reflections
a = 9.6790 (4) Åθ = 2.4–28.7°
b = 7.0710 (3) ŵ = 1.78 mm1
c = 17.3117 (7) ÅT = 296 K
β = 94.872 (2)°Box, colourless
V = 1180.54 (8) Å30.5 × 0.03 × 0.03 mm
Z = 2
Bruker X8 APEX diffractometer5899 independent reflections
Radiation source: fine-focus sealed tube5216 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 28.7°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −12→13
Tmin = 0.634, Tmax = 0.746k = −9→9
14527 measured reflectionsl = −23→23
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0313P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.001
5899 reflectionsΔρmax = 0.44 e Å3
292 parametersΔρmin = −0.44 e Å3
1 restraintAbsolute structure: Flack & Bernardinelli (2000), 2614 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.007 (5)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
Br10.81297 (2)0.79383 (4)−0.080172 (12)0.06016 (9)
O10.06025 (14)−0.47571 (19)0.48432 (7)0.0400 (3)
O30.29861 (12)−0.1832 (2)0.50486 (6)0.0367 (3)
O40.34442 (13)−0.25359 (19)0.21350 (8)0.0418 (3)
H40.4035−0.17790.23060.063*
N10.53704 (14)0.0338 (2)0.29071 (8)0.0302 (3)
N20.63915 (15)0.2755 (2)0.17458 (8)0.0351 (3)
C10.20134 (15)−0.2018 (3)0.43565 (8)0.0280 (3)
H10.1227−0.11520.43760.034*
O20.51010 (17)−0.0713 (3)0.53716 (9)0.0637 (5)
C110.40639 (17)−0.0352 (2)0.40481 (10)0.0301 (3)
H110.37780.09780.40240.036*
C100.28736 (16)−0.1544 (2)0.36682 (9)0.0257 (3)
H100.3270−0.27280.34920.031*
C20.15415 (18)−0.4034 (2)0.43110 (10)0.0302 (3)
H20.2277−0.49250.42050.036*
C90.20719 (17)−0.0612 (2)0.29633 (10)0.0275 (3)
H9A0.24620.06300.28850.033*
H9B0.1115−0.04390.30750.033*
C200.66722 (19)0.3843 (3)0.11021 (10)0.0333 (4)
C15−0.1053 (2)−0.3330 (3)0.38362 (13)0.0416 (4)
H15A−0.1899−0.39200.39610.062*
H15B−0.1117−0.30220.32940.062*
H15C−0.0903−0.21960.41360.062*
C80.21012 (17)−0.1764 (2)0.22029 (9)0.0311 (3)
H80.1889−0.08990.17660.037*
C70.09765 (18)−0.3259 (3)0.21770 (10)0.0315 (3)
C14−0.0380 (2)−0.2547 (3)0.18031 (13)0.0460 (5)
H14A−0.1099−0.34410.18860.069*
H14B−0.0312−0.23930.12570.069*
H14C−0.0595−0.13530.20270.069*
C30.01452 (19)−0.4672 (2)0.40199 (10)0.0319 (4)
C160.5343 (2)0.2401 (3)0.29620 (11)0.0392 (4)
H16A0.61850.28340.32530.047*
H16B0.45630.27830.32420.047*
C170.5224 (2)0.3318 (3)0.21754 (11)0.0421 (5)
H17A0.43610.29400.18910.051*
H17B0.52150.46830.22330.051*
C50.0058 (2)−0.6297 (2)0.27166 (12)0.0395 (4)
H5A0.0218−0.75100.24780.047*
H5B−0.0839−0.58330.25070.047*
C60.1169 (2)−0.4925 (2)0.25258 (10)0.0343 (4)
H60.2081−0.52780.26660.041*
C130.54475 (19)−0.0520 (3)0.36882 (11)0.0364 (4)
H13A0.61660.01070.40200.044*
H13B0.5696−0.18440.36530.044*
C210.5923 (2)0.5468 (3)0.08862 (11)0.0379 (4)
H210.51330.57620.11330.046*
C220.6333 (2)0.6657 (3)0.03105 (11)0.0420 (4)
H220.58260.77450.01790.050*
C180.6578 (2)−0.0185 (3)0.24953 (12)0.0387 (4)
H18A0.6627−0.15510.24510.046*
H18B0.74190.02490.27860.046*
C40.0055 (2)−0.6550 (2)0.36027 (12)0.0398 (4)
H4A−0.0788−0.71940.37170.048*
H4B0.0835−0.73330.37900.048*
C120.4169 (2)−0.0961 (3)0.48858 (11)0.0389 (4)
C240.8214 (2)0.4589 (4)0.01092 (13)0.0514 (5)
H240.89760.4280−0.01580.062*
C230.7487 (2)0.6225 (3)−0.00648 (11)0.0414 (4)
C190.6466 (2)0.0693 (3)0.16953 (11)0.0383 (4)
H19A0.72650.03360.14270.046*
H19B0.56420.02200.13990.046*
C250.7808 (2)0.3408 (3)0.06823 (12)0.0471 (5)
H250.82990.22970.07930.057*
U11U22U33U12U13U23
Br10.06273 (15)0.07268 (15)0.04532 (12)−0.01813 (12)0.00605 (9)0.02022 (11)
O10.0448 (8)0.0446 (7)0.0312 (7)−0.0100 (6)0.0071 (6)0.0077 (5)
O30.0389 (6)0.0481 (7)0.0232 (5)−0.0105 (6)0.0036 (4)0.0038 (5)
O40.0341 (7)0.0539 (8)0.0390 (7)0.0043 (6)0.0129 (6)−0.0079 (6)
N10.0268 (7)0.0342 (7)0.0301 (7)0.0026 (6)0.0059 (6)0.0041 (6)
N20.0405 (8)0.0358 (7)0.0306 (7)0.0071 (7)0.0129 (6)0.0049 (6)
C10.0287 (7)0.0316 (7)0.0241 (7)−0.0003 (7)0.0043 (5)0.0015 (7)
O20.0577 (10)0.0973 (13)0.0334 (8)−0.0328 (10)−0.0125 (7)0.0183 (9)
C110.0295 (9)0.0359 (8)0.0245 (8)−0.0029 (7)0.0003 (6)0.0029 (6)
C100.0262 (8)0.0286 (7)0.0227 (7)0.0038 (6)0.0043 (6)0.0011 (5)
C20.0328 (9)0.0299 (7)0.0283 (8)0.0024 (7)0.0045 (7)0.0058 (6)
C90.0280 (8)0.0271 (7)0.0274 (8)0.0050 (6)0.0014 (6)0.0022 (6)
C200.0325 (9)0.0395 (9)0.0281 (9)0.0016 (7)0.0033 (7)0.0017 (7)
C150.0328 (10)0.0442 (10)0.0484 (12)0.0042 (8)0.0058 (8)−0.0078 (9)
C80.0338 (8)0.0362 (9)0.0232 (7)0.0060 (7)0.0028 (6)0.0036 (7)
C70.0332 (9)0.0361 (8)0.0252 (8)0.0059 (7)0.0015 (7)−0.0057 (6)
C140.0394 (10)0.0482 (11)0.0478 (11)0.0022 (8)−0.0109 (8)0.0045 (9)
C30.0338 (9)0.0315 (8)0.0310 (9)−0.0022 (7)0.0065 (7)0.0005 (7)
C160.0476 (11)0.0376 (9)0.0346 (9)0.0001 (7)0.0158 (8)−0.0007 (7)
C170.0503 (11)0.0362 (10)0.0428 (10)0.0128 (8)0.0219 (9)0.0053 (8)
C50.0468 (11)0.0280 (8)0.0428 (11)0.0010 (7)−0.0005 (8)−0.0059 (7)
C60.0372 (9)0.0337 (8)0.0321 (9)0.0074 (7)0.0035 (7)−0.0058 (7)
C130.0274 (9)0.0472 (10)0.0343 (9)−0.0015 (7)0.0016 (7)0.0097 (8)
C210.0371 (10)0.0421 (9)0.0353 (9)0.0033 (8)0.0073 (8)0.0044 (8)
C220.0491 (12)0.0412 (9)0.0353 (10)0.0011 (9)0.0019 (8)0.0077 (8)
C180.0330 (9)0.0410 (10)0.0435 (11)0.0087 (8)0.0119 (8)0.0073 (8)
C40.0444 (11)0.0303 (9)0.0447 (11)−0.0045 (7)0.0047 (8)0.0019 (7)
C120.0408 (11)0.0483 (10)0.0273 (9)−0.0103 (8)0.0003 (7)0.0050 (8)
C240.0478 (12)0.0690 (14)0.0397 (11)0.0096 (11)0.0177 (9)0.0107 (10)
C230.0443 (11)0.0519 (12)0.0275 (9)−0.0110 (9)−0.0005 (8)0.0069 (8)
C190.0432 (11)0.0365 (9)0.0374 (10)0.0094 (8)0.0161 (8)0.0013 (7)
C250.0480 (11)0.0559 (13)0.0396 (10)0.0154 (9)0.0160 (9)0.0120 (9)
Br1—C231.9020 (19)C8—H80.9800
O1—C21.442 (2)C7—C61.329 (3)
O1—C31.457 (2)C7—C141.500 (3)
O3—C121.351 (2)C14—H14A0.9600
O3—C11.465 (2)C14—H14B0.9600
O4—C81.424 (2)C14—H14C0.9600
O4—H40.8200C3—C41.510 (3)
N1—C161.462 (3)C16—C171.504 (3)
N1—C181.467 (2)C16—H16A0.9700
N1—C131.478 (2)C16—H16B0.9700
N2—C201.400 (2)C17—H17A0.9700
N2—C171.460 (2)C17—H17B0.9700
N2—C191.462 (3)C5—C61.505 (3)
C1—C21.497 (3)C5—C41.545 (3)
C1—C101.5473 (19)C5—H5A0.9700
C1—H10.9800C5—H5B0.9700
O2—C121.193 (3)C6—H60.9300
C11—C121.508 (2)C13—H13A0.9700
C11—C131.529 (2)C13—H13B0.9700
C11—C101.530 (2)C21—C221.387 (3)
C11—H110.9800C21—H210.9300
C10—C91.538 (2)C22—C231.374 (3)
C10—H100.9800C22—H220.9300
C2—C31.473 (3)C18—C191.513 (3)
C2—H20.9800C18—H18A0.9700
C9—C81.550 (2)C18—H18B0.9700
C9—H9A0.9700C4—H4A0.9700
C9—H9B0.9700C4—H4B0.9700
C20—C211.393 (3)C24—C231.373 (3)
C20—C251.402 (2)C24—C251.379 (3)
C15—C31.511 (3)C24—H240.9300
C15—H15A0.9600C19—H19A0.9700
C15—H15B0.9600C19—H19B0.9700
C15—H15C0.9600C25—H250.9300
C8—C71.516 (3)
C2—O1—C361.05 (11)O1—C3—C15113.30 (14)
C12—O3—C1111.57 (12)C2—C3—C15123.01 (16)
C8—O4—H4109.5C4—C3—C15116.06 (17)
C16—N1—C18107.64 (14)N1—C16—C17111.83 (16)
C16—N1—C13110.47 (15)N1—C16—H16A109.2
C18—N1—C13111.14 (14)C17—C16—H16A109.2
C20—N2—C17117.81 (15)N1—C16—H16B109.2
C20—N2—C19119.11 (14)C17—C16—H16B109.2
C17—N2—C19110.26 (14)H16A—C16—H16B107.9
O3—C1—C2107.50 (14)N2—C17—C16109.89 (15)
O3—C1—C10105.06 (12)N2—C17—H17A109.7
C2—C1—C10110.33 (13)C16—C17—H17A109.7
O3—C1—H1111.2N2—C17—H17B109.7
C2—C1—H1111.2C16—C17—H17B109.7
C10—C1—H1111.2H17A—C17—H17B108.2
C12—C11—C13112.33 (15)C6—C5—C4110.75 (16)
C12—C11—C10104.05 (13)C6—C5—H5A109.5
C13—C11—C10115.82 (14)C4—C5—H5A109.5
C12—C11—H11108.1C6—C5—H5B109.5
C13—C11—H11108.1C4—C5—H5B109.5
C10—C11—H11108.1H5A—C5—H5B108.1
C11—C10—C9114.56 (13)C7—C6—C5126.55 (18)
C11—C10—C1102.89 (13)C7—C6—H6116.7
C9—C10—C1115.83 (13)C5—C6—H6116.7
C11—C10—H10107.7N1—C13—C11111.29 (14)
C9—C10—H10107.7N1—C13—H13A109.4
C1—C10—H10107.7C11—C13—H13A109.4
O1—C2—C359.99 (11)N1—C13—H13B109.4
O1—C2—C1120.69 (14)C11—C13—H13B109.4
C3—C2—C1125.25 (15)H13A—C13—H13B108.0
O1—C2—H2113.5C22—C21—C20121.23 (17)
C3—C2—H2113.5C22—C21—H21119.4
C1—C2—H2113.5C20—C21—H21119.4
C10—C9—C8113.85 (13)C23—C22—C21119.91 (19)
C10—C9—H9A108.8C23—C22—H22120.0
C8—C9—H9A108.8C21—C22—H22120.0
C10—C9—H9B108.8N1—C18—C19110.06 (15)
C8—C9—H9B108.8N1—C18—H18A109.6
H9A—C9—H9B107.7C19—C18—H18A109.6
C21—C20—N2122.36 (15)N1—C18—H18B109.6
C21—C20—C25117.07 (17)C19—C18—H18B109.6
N2—C20—C25120.38 (16)H18A—C18—H18B108.2
C3—C15—H15A109.5C3—C4—C5111.61 (15)
C3—C15—H15B109.5C3—C4—H4A109.3
H15A—C15—H15B109.5C5—C4—H4A109.3
C3—C15—H15C109.5C3—C4—H4B109.3
H15A—C15—H15C109.5C5—C4—H4B109.3
H15B—C15—H15C109.5H4A—C4—H4B108.0
O4—C8—C7112.85 (15)O2—C12—O3121.57 (17)
O4—C8—C9110.74 (14)O2—C12—C11128.41 (17)
C7—C8—C9109.07 (12)O3—C12—C11109.99 (16)
O4—C8—H8108.0C23—C24—C25119.72 (18)
C7—C8—H8108.0C23—C24—H24120.1
C9—C8—H8108.0C25—C24—H24120.1
C6—C7—C14125.23 (18)C24—C23—C22120.37 (18)
C6—C7—C8122.16 (17)C24—C23—Br1119.54 (15)
C14—C7—C8112.24 (16)C22—C23—Br1120.05 (16)
C7—C14—H14A109.5N2—C19—C18110.77 (16)
C7—C14—H14B109.5N2—C19—H19A109.5
H14A—C14—H14B109.5C18—C19—H19A109.5
C7—C14—H14C109.5N2—C19—H19B109.5
H14A—C14—H14C109.5C18—C19—H19B109.5
H14B—C14—H14C109.5H19A—C19—H19B108.1
O1—C3—C258.95 (11)C24—C25—C20121.58 (19)
O1—C3—C4115.59 (15)C24—C25—H25119.2
C2—C3—C4116.57 (15)C20—C25—H25119.2
D—H···AD—HH···AD···AD—H···A
O4—H4···N10.822.182.995 (4)171
C1—H1···O1i0.982.523.389 (3)148
C15—H15C···O1i0.962.473.410 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H4⋯N10.822.182.995 (4)171
C1—H1⋯O1i 0.982.523.389 (3)148
C15—H15C⋯O1i 0.962.473.410 (3)167

Symmetry code: (i) .

  9 in total

1.  Antitumor germacranolides from Anvillea garcinii.

Authors:  E Abdel Sattar; A M Galal; G S Mossa
Journal:  J Nat Prod       Date:  1996-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Parthenolide and its photochemically synthesized 1(10)Z isomer: chemical reactivity and structure-activity relationship studies in human leucocyte chemotaxis.

Authors:  Hannes Neukirch; Nicole C Kaneider; Christian J Wiedermann; Antonio Guerriero; Michele D'Ambrosio
Journal:  Bioorg Med Chem       Date:  2003-04-03       Impact factor: 3.641

4.  Synthesis and anti-viral activity of a series of sesquiterpene lactones and analogues in the subgenomic HCV replicon system.

Authors:  Der-Ren Hwang; Yu-Shan Wu; Chun-Wei Chang; Tzu-Wen Lien; Wei-Cheng Chen; Uan-Kang Tan; John T A Hsu; Hsing-Pang Hsieh
Journal:  Bioorg Med Chem       Date:  2005-09-02       Impact factor: 3.641

5.  Germacranolides from Anvillea radiata.

Authors:  B El Hassany; F El Hanbali; M Akssira; F Mellouki; A Haidour; A F Barrero
Journal:  Fitoterapia       Date:  2004-09       Impact factor: 2.882

6.  Preliminary toxicity studies on ethanol extracts of the aerial parts of Artemisia abyssinica and A. Inculta in mice.

Authors:  S Qureshi; A M Ageel; M A al-Yahya; M Tariq; J S Mossa; A H Shah
Journal:  J Ethnopharmacol       Date:  1990-02       Impact factor: 4.360

7.  Aminoparthenolides as novel anti-leukemic agents: Discovery of the NF-kappaB inhibitor, DMAPT (LC-1).

Authors:  Sundar Neelakantan; Shama Nasim; Monica L Guzman; Craig T Jordan; Peter A Crooks
Journal:  Bioorg Med Chem Lett       Date:  2009-05-27       Impact factor: 2.823

8.  9β-Hy-droxy-1β,10α-ep-oxy-parthenolide.

Authors:  Mohamed Moumou; Mohamed Akssira; Lahcen El Ammari; Ahmed Benharref; Moha Berraho
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-25

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  1 in total

1.  Crystal structure of (1S,2R,4R,9S,11S,12R)-9α-hy-droxy-4,8-dimethyl-12-[(thio-morpholin-4-yl)meth-yl]-3,14-dioxatri-cyclo-[9.3.0.0(2,4)]tetra-dec-7-en-13-one.

Authors:  Ahmed Benharref; Mohamed Akssira; Lahcen El Ammari; Mohamed Saadi; Moha Berraho
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-31
  1 in total

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