Literature DB >> 24823351

Versatile microRNA biogenesis in animals and their viruses.

Mingyi Xie1, Joan A Steitz1.   

Abstract

MicroRNAs (miRNAs) are ubiquitous gene regulators that modulate essential cellular processes at the post-transcriptional level. In metazoans and their viruses, most miRNAs are produced from hairpin-containing primary transcripts that are sequentially cleaved by nuclear Drosha and cytoplasmic Dicer. In the last decade, alternative mechanisms that bypass either the Drosha or Dicer cleavage step have emerged, increasing the complexity of the miRNA regulatory network. Here, we highlight non-canonical pathways that generate miRNAs using a variety of molecular machineries that play fundamental roles in the biogenesis and processing of other classes of cellular RNAs.

Entities:  

Keywords:  AGO2 slicer activity; Dicer; Integrator; Microprocessor; exportin-5; m7G-capped pre-miRNA; microRNA biogenesis; mirtron; tRNaseZ; viral microRNA

Mesh:

Substances:

Year:  2014        PMID: 24823351      PMCID: PMC4156499          DOI: 10.4161/rna.28985

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  100 in total

Review 1.  RNA-polymerase III-driven expression cassettes in human gene therapy.

Authors:  M F Medina; S Joshi
Journal:  Curr Opin Mol Ther       Date:  1999-10

2.  A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.

Authors:  G Hutvágner; J McLachlan; A E Pasquinelli; E Bálint; T Tuschl; P D Zamore
Journal:  Science       Date:  2001-07-12       Impact factor: 47.728

3.  Poly(A)-specific ribonuclease mediates 3'-end trimming of Argonaute2-cleaved precursor microRNAs.

Authors:  Mayuko Yoda; Daniel Cifuentes; Natsuko Izumi; Yuriko Sakaguchi; Tsutomu Suzuki; Antonio J Giraldez; Yukihide Tomari
Journal:  Cell Rep       Date:  2013-10-24       Impact factor: 9.423

4.  A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

Authors:  Yong Sun Lee; Yoshiyuki Shibata; Ankit Malhotra; Anindya Dutta
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

5.  Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing.

Authors:  A Grishok; A E Pasquinelli; D Conte; N Li; S Parrish; I Ha; D L Baillie; A Fire; G Ruvkun; C C Mello
Journal:  Cell       Date:  2001-07-13       Impact factor: 41.582

6.  PHAX, a mediator of U snRNA nuclear export whose activity is regulated by phosphorylation.

Authors:  M Ohno; A Segref; A Bachi; M Wilm; I W Mattaj
Journal:  Cell       Date:  2000-04-14       Impact factor: 41.582

7.  A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans.

Authors:  S W Knight; B L Bass
Journal:  Science       Date:  2001-08-02       Impact factor: 47.728

8.  A mammalian herpesvirus uses noncanonical expression and processing mechanisms to generate viral MicroRNAs.

Authors:  Hal P Bogerd; Heather W Karnowski; Xuezhong Cai; Jinwook Shin; Michael Pohlers; Bryan R Cullen
Journal:  Mol Cell       Date:  2010-01-15       Impact factor: 17.970

9.  Argonaute-bound small RNAs from promoter-proximal RNA polymerase II.

Authors:  Jesse R Zamudio; Timothy J Kelly; Phillip A Sharp
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

10.  Mammalian 5'-capped microRNA precursors that generate a single microRNA.

Authors:  Mingyi Xie; Mingfeng Li; Anna Vilborg; Nara Lee; Mei-Di Shu; Valeria Yartseva; Nenad Šestan; Joan A Steitz
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

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  28 in total

Review 1.  Regulation of microRNA biogenesis.

Authors:  Minju Ha; V Narry Kim
Journal:  Nat Rev Mol Cell Biol       Date:  2014-07-16       Impact factor: 94.444

2.  AKI Recovery Induced by Mesenchymal Stromal Cell-Derived Extracellular Vesicles Carrying MicroRNAs.

Authors:  Federica Collino; Stefania Bruno; Danny Incarnato; Daniela Dettori; Francesco Neri; Paolo Provero; Margherita Pomatto; Salvatore Oliviero; Ciro Tetta; Peter J Quesenberry; Giovanni Camussi
Journal:  J Am Soc Nephrol       Date:  2015-04-21       Impact factor: 10.121

3.  The evidence for a microRNA product of human DROSHA gene.

Authors:  Peter Mechtler; Sydney Johnson; Hannah Slabodkin; Amir B Cohanim; Leonid Brodsky; Eugene S Kandel
Journal:  RNA Biol       Date:  2017-09-05       Impact factor: 4.652

4.  Pigmy MicroRNA: surveillance cops in Therapies kingdom.

Authors:  Utpal Bhadra; Pradipta Patra; Jagamohan Chhatai; Manika Pal-Bhadra
Journal:  Mol Med       Date:  2016-09-28       Impact factor: 6.354

5.  Perturbation of DROSHA and DICER expression by human papillomavirus 16 oncoproteins.

Authors:  Mallory E Harden; Karl Munger
Journal:  Virology       Date:  2017-04-24       Impact factor: 3.616

Review 6.  Recent findings on the role of microRNAs in genetic kidney diseases.

Authors:  Hassan Askari; Ehsan Raeis-Abdollahi; Mohammad Foad Abazari; Hassan Akrami; Sina Vakili; Amir Savardashtaki; Amir Tajbakhsh; Nima Sanadgol; Asaad Azarnezhad; Leila Rahmati; Payman Raise Abdullahi; Shohreh Zare Karizi; Ali Reza Safarpour
Journal:  Mol Biol Rep       Date:  2022-06-18       Impact factor: 2.742

Review 7.  The Role of MicroRNAs in Hyperlipidemia: From Pathogenesis to Therapeutical Application.

Authors:  Yu Xiang; Li Mao; Mei-Ling Zuo; Gui-Lin Song; Li-Ming Tan; Zhong-Bao Yang
Journal:  Mediators Inflamm       Date:  2022-06-17       Impact factor: 4.529

Review 8.  The miRNA Interactome in Metabolic Homeostasis.

Authors:  Sean M Hartig; Mark P Hamilton; David A Bader; Sean E McGuire
Journal:  Trends Endocrinol Metab       Date:  2015-10-20       Impact factor: 12.015

Review 9.  Idiosyncrasies of Viral Noncoding RNAs Provide Insights into Host Cell Biology.

Authors:  Johanna B Withers; Vanessa Mondol; Paulina Pawlica; Nicolle A Rosa-Mercado; Kazimierz T Tycowski; Salehe Ghasempur; Seyed F Torabi; Joan A Steitz
Journal:  Annu Rev Virol       Date:  2019-04-30       Impact factor: 10.431

10.  A noncanonical microRNA derived from the snaR-A noncoding RNA targets a metastasis inhibitor.

Authors:  Daniel Stribling; Yi Lei; Casey M Guardia; Lu Li; Christopher J Fields; Pawel Nowialis; Rene Opavsky; Rolf Renne; Mingyi Xie
Journal:  RNA       Date:  2021-04-01       Impact factor: 5.636

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