Literature DB >> 24821766

DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins.

Hideki Yoshida1, Ko Hirano1, Tomomi Sato1, Nobutaka Mitsuda2, Mika Nomoto3, Kenichiro Maeo4, Eriko Koketsu1, Rie Mitani1, Mayuko Kawamura1, Sumie Ishiguro4, Yasuomi Tada5, Masaru Ohme-Takagi6, Makoto Matsuoka1, Miyako Ueguchi-Tanaka7.   

Abstract

DELLA protein is a key negative regulator of gibberellin (GA) signaling. Although how DELLA regulates downstream gene expression remains unclear, DELLA has been proposed to function as a transcriptional activator. However, because DELLA lacks a DNA-binding domain, intermediate protein(s) mediating the DELLA/DNA interaction are believed to be necessary for activating DELLA target genes. Here, using yeast hybrid screenings, we identified five members of indeterminate domain (IDD) protein family which bind physically to both DELLA and the promoter sequence of the GA-positive regulator SCARECROW-LIKE 3 (SCL3), which previously was characterized as a DELLA direct target gene. Transient assays using Arabidopsis protoplasts demonstrated that a luciferase reporter controlled by the SCL3 promoter was additively transactivated by REPRESSOR of ga1-3 (RGA) and IDDs. Phenotypic analysis of transgenic plants expressing AtIDD3 (one of the 16 IDDs in the Arabidopsis genome) fused with the plant-specific repression domain (SRDX) supported the possibility that AtIDD3 is positively involved in GA signaling. In addition, we found that SCL3 protein also interacts with IDDs, resulting in the suppression of its target gene expression. In this context, DELLA and SCL3 interact competitively with IDD proteins to regulate downstream gene expression. These results suggest that the coregulators DELLA and SCL3, using IDDs as transcriptional scaffolds for DNA binding, antagonistically regulate the expression of their downstream targets to control the GA signaling pathway.

Entities:  

Keywords:  coactivator/corepressor exchange regulation system; gibberellin feedback regulation; transcription factor

Mesh:

Substances:

Year:  2014        PMID: 24821766      PMCID: PMC4040565          DOI: 10.1073/pnas.1321669111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  A gene expression map of the Arabidopsis root.

Authors:  Kenneth Birnbaum; Dennis E Shasha; Jean Y Wang; Jee W Jung; Georgina M Lambert; David W Galbraith; Philip N Benfey
Journal:  Science       Date:  2003-12-12       Impact factor: 47.728

2.  The maize ID1 flowering time regulator is a zinc finger protein with novel DNA binding properties.

Authors:  Akiko Kozaki; Sarah Hake; Joseph Colasanti
Journal:  Nucleic Acids Res       Date:  2004-03-12       Impact factor: 16.971

3.  Maturation of the ground tissue of the root is regulated by gibberellin and SCARECROW and requires SHORT-ROOT.

Authors:  Alice J Paquette; Philip N Benfey
Journal:  Plant Physiol       Date:  2005-06       Impact factor: 8.340

Review 4.  Sensors and signals: a coactivator/corepressor/epigenetic code for integrating signal-dependent programs of transcriptional response.

Authors:  Michael G Rosenfeld; Victoria V Lunyak; Christopher K Glass
Journal:  Genes Dev       Date:  2006-06-01       Impact factor: 11.361

5.  A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.

Authors:  Miyo T Morita; Keitaro Sakaguchi; Shin-Ichiro Kiyose; Kensuke Taira; Takehide Kato; Moritaka Nakamura; Masao Tasaka
Journal:  Plant J       Date:  2006-06-30       Impact factor: 6.417

6.  The indeterminate gene encodes a zinc finger protein and regulates a leaf-generated signal required for the transition to flowering in maize.

Authors:  J Colasanti; Z Yuan; V Sundaresan
Journal:  Cell       Date:  1998-05-15       Impact factor: 41.582

7.  The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes.

Authors:  L D Pysh; J W Wysocka-Diller; C Camilleri; D Bouchez; P N Benfey
Journal:  Plant J       Date:  1999-04       Impact factor: 6.417

8.  Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter.

Authors:  Raphaël Métivier; Graziella Penot; Michael R Hübner; George Reid; Heike Brand; Martin Kos; Frank Gannon
Journal:  Cell       Date:  2003-12-12       Impact factor: 41.582

9.  DELLA-interacting SWI3C core subunit of switch/sucrose nonfermenting chromatin remodeling complex modulates gibberellin responses and hormonal cross talk in Arabidopsis.

Authors:  Elzbieta A Sarnowska; Anna T Rolicka; Ernest Bucior; Pawel Cwiek; Takayuki Tohge; Alisdair R Fernie; Yusuke Jikumaru; Yuji Kamiya; Rainer Franzen; Elmon Schmelzer; Aimone Porri; Sebastian Sacharowski; Dominika M Gratkowska; Dorota L Zugaj; Aleksandra Taff; Anna Zalewska; Rafal Archacki; Seth J Davis; George Coupland; Csaba Koncz; Andrzej Jerzmanowski; Tomasz J Sarnowski
Journal:  Plant Physiol       Date:  2013-07-26       Impact factor: 8.340

Review 10.  Gibberellin metabolism: new insights revealed by the genes.

Authors:  P Hedden; A L Phillips
Journal:  Trends Plant Sci       Date:  2000-12       Impact factor: 18.313

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  71 in total

1.  The plant ESCRT component FREE1 shuttles to the nucleus to attenuate abscisic acid signalling.

Authors:  Hongbo Li; Yingzhu Li; Qiong Zhao; Tingting Li; Juan Wei; Baiying Li; Wenjin Shen; Chao Yang; Yonglun Zeng; Pedro L Rodriguez; Yunde Zhao; Liwen Jiang; Xiaojing Wang; Caiji Gao
Journal:  Nat Plants       Date:  2019-04-08       Impact factor: 15.793

2.  Comparative co-expression network analysis extracts the SlHSP70 gene affecting to shoot elongation of tomato.

Authors:  Nam Tuan Vu; Ken Kamiya; Atsushi Fukushima; Shuhei Hao; Wang Ning; Tohru Ariizumi; Hiroshi Ezura; Miyako Kusano
Journal:  Plant Biotechnol (Tokyo)       Date:  2019-09-25       Impact factor: 1.133

Review 3.  DELLA and SCL3 balance gibberellin feedback regulation by utilizing INDETERMINATE DOMAIN proteins as transcriptional scaffolds.

Authors:  Hideki Yoshida; Miyako Ueguchi-Tanaka
Journal:  Plant Signal Behav       Date:  2014

Review 4.  Phosphorylation regulates the activity of INDETERMINATE-DOMAIN (IDD/BIRD) proteins in response to diverse environmental conditions.

Authors:  Ronny Völz; Naganand Rayapuram; Heribert Hirt
Journal:  Plant Signal Behav       Date:  2019-07-17

5.  Phylogenetic analysis of IDD gene family and characterization of its expression in response to flower induction in Malus.

Authors:  Sheng Fan; Dong Zhang; Libo Xing; Siyan Qi; Lisha Du; Haiqin Wu; Hongxia Shao; Youmei Li; Juanjuan Ma; Mingyu Han
Journal:  Mol Genet Genomics       Date:  2017-03-17       Impact factor: 3.291

6.  Uncovering DELLA-Independent Gibberellin Responses by Characterizing New Tomato procera Mutants.

Authors:  Sivan Livne; Vai S Lor; Ido Nir; Natanella Eliaz; Asaph Aharoni; Neil E Olszewski; Yuval Eshed; David Weiss
Journal:  Plant Cell       Date:  2015-06-02       Impact factor: 11.277

7.  Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification.

Authors:  Yuchen Long; Wouter Smet; Alfredo Cruz-Ramírez; Bas Castelijns; Wim de Jonge; Ari Pekka Mähönen; Benjamin P Bouchet; Gabino Sanchez Perez; Anna Akhmanova; Ben Scheres; Ikram Blilou
Journal:  Plant Cell       Date:  2015-03-31       Impact factor: 11.277

8.  NKD Transcription Factors Are Central Regulators of Maize Endosperm Development.

Authors:  Bryan C Gontarek; Anjanasree K Neelakandan; Hao Wu; Philip W Becraft
Journal:  Plant Cell       Date:  2016-11-28       Impact factor: 11.277

9.  Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.

Authors:  Yoshinori Hirano; Masahiro Nakagawa; Tomoe Suyama; Kohji Murase; Maya Shirakawa; Seiji Takayama; Tai-Ping Sun; Toshio Hakoshima
Journal:  Nat Plants       Date:  2017-02-17       Impact factor: 15.793

Review 10.  Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis.

Authors:  Allyson M MacLean; Armando Bravo; Maria J Harrison
Journal:  Plant Cell       Date:  2017-08-30       Impact factor: 11.277

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