Literature DB >> 24812416

From lost in translation to paradise found: enabling protein biomarker method transfer by mass spectrometry.

Russell P Grant1, Andrew N Hoofnagle2.   

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Year:  2014        PMID： 24812416      PMCID： PMC4315805          DOI： 10.1373/clinchem.2014.224840

Source DB:  PubMed          Journal:  Clin Chem        ISSN： 0009-9147            Impact factor:   8.327


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  15 in total

1.  Simultaneous quantification of apolipoprotein A-I and apolipoprotein B by liquid-chromatography-multiple- reaction-monitoring mass spectrometry.

Authors:  Sean A Agger; Luke C Marney; Andrew N Hoofnagle
Journal:  Clin Chem       Date:  2010-10-05       Impact factor: 8.327

2.  The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline.

Authors:  Amanda G Paulovich; Jeffrey R Whiteaker; Andrew N Hoofnagle; Pei Wang
Journal:  Proteomics Clin Appl       Date:  2008-10-01       Impact factor: 3.494

3.  Drug development: Raise standards for preclinical cancer research.

Authors:  C Glenn Begley; Lee M Ellis
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

Review 4.  An appraisal of statistical procedures used in derivation of reference intervals.

Authors:  Kiyoshi Ichihara; James C Boyd
Journal:  Clin Chem Lab Med       Date:  2010-11       Impact factor: 3.694

5.  Assessing analytical specificity in quantitative analysis using tandem mass spectrometry.

Authors:  Mark M Kushnir; Alan L Rockwood; Gordon J Nelson; Bingfang Yue; Francis M Urry
Journal:  Clin Biochem       Date:  2005-04       Impact factor: 3.281

Review 6.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

7.  Fit-for-purpose method development and validation for successful biomarker measurement.

Authors:  Jean W Lee; Viswanath Devanarayan; Yu Chen Barrett; Russell Weiner; John Allinson; Scott Fountain; Stephen Keller; Ira Weinryb; Marie Green; Larry Duan; James A Rogers; Robert Millham; Peter J O'Brien; Jeff Sailstad; Masood Khan; Chad Ray; John A Wagner
Journal:  Pharm Res       Date:  2006-01-12       Impact factor: 4.200

8.  Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

Authors:  Susan E Abbatiello; D R Mani; Hasmik Keshishian; Steven A Carr
Journal:  Clin Chem       Date:  2009-12-18       Impact factor: 8.327

9.  Interlaboratory agreement of insulin-like growth factor 1 concentrations measured by mass spectrometry.

Authors:  Holly D Cox; Filipe Lopes; Getachew A Woldemariam; Jessica O Becker; Mark C Parkin; Andreas Thomas; Anthony W Butch; David A Cowan; Mario Thevis; Larry D Bowers; Andrew N Hoofnagle
Journal:  Clin Chem       Date:  2013-12-09       Impact factor: 8.327

10.  Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach.

Authors:  Steven A Carr; Susan E Abbatiello; Bradley L Ackermann; Christoph Borchers; Bruno Domon; Eric W Deutsch; Russell P Grant; Andrew N Hoofnagle; Ruth Hüttenhain; John M Koomen; Daniel C Liebler; Tao Liu; Brendan MacLean; D R Mani; Elizabeth Mansfield; Hendrik Neubert; Amanda G Paulovich; Lukas Reiter; Olga Vitek; Ruedi Aebersold; Leigh Anderson; Robert Bethem; Josip Blonder; Emily Boja; Julianne Botelho; Michael Boyne; Ralph A Bradshaw; Alma L Burlingame; Daniel Chan; Hasmik Keshishian; Eric Kuhn; Christopher Kinsinger; Jerry S H Lee; Sang-Won Lee; Robert Moritz; Juan Oses-Prieto; Nader Rifai; James Ritchie; Henry Rodriguez; Pothur R Srinivas; R Reid Townsend; Jennifer Van Eyk; Gordon Whiteley; Arun Wiita; Susan Weintraub
Journal:  Mol Cell Proteomics       Date:  2014-01-17       Impact factor: 5.911
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  36 in total

1.  Highly Reproducible Automated Proteomics Sample Preparation Workflow for Quantitative Mass Spectrometry.

Authors:  Qin Fu; Michael P Kowalski; Mitra Mastali; Sarah J Parker; Kimia Sobhani; Irene van den Broek; Christie L Hunter; Jennifer E Van Eyk
Journal:  J Proteome Res       Date:  2017-11-10       Impact factor: 4.466

2.  Domain-specific Quantification of Prion Protein in Cerebrospinal Fluid by Targeted Mass Spectrometry.

Authors:  Eric Vallabh Minikel; Eric Kuhn; Alexandra R Cocco; Sonia M Vallabh; Christina R Hartigan; Andrew G Reidenbach; Jiri G Safar; Gregory J Raymond; Michael D McCarthy; Rhonda O'Keefe; Franc Llorens; Inga Zerr; Sabina Capellari; Piero Parchi; Stuart L Schreiber; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2019-09-26       Impact factor: 5.911

3.  Workshop Report: Crystal City VI-Bioanalytical Method Validation for Biomarkers.

Authors:  Mark E Arnold; Brian Booth; Lindsay King; Chad Ray
Journal:  AAPS J       Date:  2016-08-11       Impact factor: 4.009

4.  Mass Spectrometry-Based Plasma Proteomics: Considerations from Sample Collection to Achieving Translational Data.

Authors:  Vera Ignjatovic; Philipp E Geyer; Krishnan K Palaniappan; Jessica E Chaaban; Gilbert S Omenn; Mark S Baker; Eric W Deutsch; Jochen M Schwenk
Journal:  J Proteome Res       Date:  2019-10-11       Impact factor: 4.466

5.  Matrix-Matched Calibration Curves for Assessing Analytical Figures of Merit in Quantitative Proteomics.

Authors:  Lindsay K Pino; Brian C Searle; Han-Yin Yang; Andrew N Hoofnagle; William S Noble; Michael J MacCoss
Journal:  J Proteome Res       Date:  2020-02-24       Impact factor: 4.466

6.  Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.

Authors:  Andrew N Hoofnagle; Jeffrey R Whiteaker; Steven A Carr; Eric Kuhn; Tao Liu; Sam A Massoni; Stefani N Thomas; R Reid Townsend; Lisa J Zimmerman; Emily Boja; Jing Chen; Daniel L Crimmins; Sherri R Davies; Yuqian Gao; Tara R Hiltke; Karen A Ketchum; Christopher R Kinsinger; Mehdi Mesri; Matthew R Meyer; Wei-Jun Qian; Regine M Schoenherr; Mitchell G Scott; Tujin Shi; Gordon R Whiteley; John A Wrobel; Chaochao Wu; Brad L Ackermann; Ruedi Aebersold; David R Barnidge; David M Bunk; Nigel Clarke; Jordan B Fishman; Russ P Grant; Ulrike Kusebauch; Mark M Kushnir; Mark S Lowenthal; Robert L Moritz; Hendrik Neubert; Scott D Patterson; Alan L Rockwood; John Rogers; Ravinder J Singh; Jennifer E Van Eyk; Steven H Wong; Shucha Zhang; Daniel W Chan; Xian Chen; Matthew J Ellis; Daniel C Liebler; Karin D Rodland; Henry Rodriguez; Richard D Smith; Zhen Zhang; Hui Zhang; Amanda G Paulovich
Journal:  Clin Chem       Date:  2016-01       Impact factor: 8.327

Review 7.  Clinical potential of mass spectrometry-based proteogenomics.

Authors:  Bing Zhang; Jeffrey R Whiteaker; Andrew N Hoofnagle; Geoffrey S Baird; Karin D Rodland; Amanda G Paulovich
Journal:  Nat Rev Clin Oncol       Date:  2019-04       Impact factor: 66.675

8.  Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment.

Authors:  Philip M Remes; Ping Yip; Michael J MacCoss
Journal:  Anal Chem       Date:  2020-08-12       Impact factor: 6.986

9.  Calibration Using a Single-Point External Reference Material Harmonizes Quantitative Mass Spectrometry Proteomics Data between Platforms and Laboratories.

Authors:  Lindsay K Pino; Brian C Searle; Eric L Huang; William Stafford Noble; Andrew N Hoofnagle; Michael J MacCoss
Journal:  Anal Chem       Date:  2018-10-23       Impact factor: 6.986

10.  Acyltransferase-mediated selection of the length of the fatty acyl chain and of the acylation site governs activation of bacterial RTX toxins.

Authors:  Adriana Osickova; Humaira Khaliq; Jiri Masin; David Jurnecka; Anna Sukova; Radovan Fiser; Jana Holubova; Ondrej Stanek; Peter Sebo; Radim Osicka
Journal:  J Biol Chem       Date:  2020-05-27       Impact factor: 5.157
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