Literature DB >> 24794700

Imaging RNA Polymerase II transcription sites in living cells.

Martin S Buckley1, John T Lis2.   

Abstract

Over the past twenty years, exciting developments in optical and molecular imaging approaches have allowed researchers to examine with unprecedented resolution the spatial organization of transcription sites in the nucleus. An attractive model that has developed from these studies is that active genes cluster to preformed transcription factories that contain multiple active RNA polymerases and transcription factor proteins required for efficient mRNA biogenesis. However, this model has been extensively debated in part due to the fact transcription factories and their features have only been documented in fixed cells. In this review, we will focus on recent live-cell imaging studies that are changing our understanding of transcription factories.
Copyright © 2014. Published by Elsevier Ltd.

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Year:  2014        PMID: 24794700      PMCID: PMC5497218          DOI: 10.1016/j.gde.2014.01.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  35 in total

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Authors:  Leighton J Core; Joshua J Waterfall; John T Lis
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Review 2.  Genome architecture: domain organization of interphase chromosomes.

Authors:  Wendy A Bickmore; Bas van Steensel
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

3.  Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells.

Authors:  Katie L Zobeck; Martin S Buckley; Warren R Zipfel; John T Lis
Journal:  Mol Cell       Date:  2010-12-22       Impact factor: 17.970

4.  The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation.

Authors:  Tobias Ragoczy; M A Bender; Agnes Telling; Rachel Byron; Mark Groudine
Journal:  Genes Dev       Date:  2006-05-16       Impact factor: 11.361

5.  P-TEFb is critical for the maturation of RNA polymerase II into productive elongation in vivo.

Authors:  Zhuoyu Ni; Abbie Saunders; Nicholas J Fuda; Jie Yao; Jose-Ramon Suarez; Watt W Webb; John T Lis
Journal:  Mol Cell Biol       Date:  2007-12-10       Impact factor: 4.272

Review 6.  Single-molecule approaches to stochastic gene expression.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Annu Rev Biophys       Date:  2009       Impact factor: 12.981

7.  Active genes dynamically colocalize to shared sites of ongoing transcription.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Karen E Brown; David Carter; Alice Horton; Emmanuel Debrand; Beatriz Goyenechea; Jennifer A Mitchell; Susana Lopes; Wolf Reik; Peter Fraser
Journal:  Nat Genet       Date:  2004-09-07       Impact factor: 38.330

8.  Transcription factories are nuclear subcompartments that remain in the absence of transcription.

Authors:  Jennifer A Mitchell; Peter Fraser
Journal:  Genes Dev       Date:  2008-01-01       Impact factor: 11.361

9.  The transcription cycle of RNA polymerase II in living cells.

Authors:  Hiroshi Kimura; Kimihiko Sugaya; Peter R Cook
Journal:  J Cell Biol       Date:  2002-12-09       Impact factor: 10.539

10.  Transcription factories.

Authors:  Dietmar Rieder; Zlatko Trajanoski; James G McNally
Journal:  Front Genet       Date:  2012-10-23       Impact factor: 4.599

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  19 in total

1.  Serotonin signaling by maternal neurons upon stress ensures progeny survival.

Authors:  Srijit Das; Felicia K Ooi; Johnny Cruz Corchado; Leah C Fuller; Joshua A Weiner; Veena Prahlad
Journal:  Elife       Date:  2020-04-23       Impact factor: 8.140

2.  A critical role for topoisomerase IIb and DNA double strand breaks in transcription.

Authors:  Stuart K Calderwood
Journal:  Transcription       Date:  2016-04-21

Review 3.  Heterogeneous fluid-like movements of chromatin and their implications to transcription.

Authors:  S S Ashwin; Kazuhiro Maeshima; Masaki Sasai
Journal:  Biophys Rev       Date:  2020-03-23

4.  Heat Shock Protein Genes Undergo Dynamic Alteration in Their Three-Dimensional Structure and Genome Organization in Response to Thermal Stress.

Authors:  Surabhi Chowdhary; Amoldeep S Kainth; David S Gross
Journal:  Mol Cell Biol       Date:  2017-11-28       Impact factor: 4.272

5.  Olfactory experience primes the heat shock transcription factor HSF-1 to enhance the expression of molecular chaperones in C. elegans.

Authors:  Felicia K Ooi; Veena Prahlad
Journal:  Sci Signal       Date:  2017-10-17       Impact factor: 8.192

6.  RNA Polymerase II cluster dynamics predict mRNA output in living cells.

Authors:  Won-Ki Cho; Namrata Jayanth; Brian P English; Takuma Inoue; J Owen Andrews; William Conway; Jonathan B Grimm; Jan-Hendrik Spille; Luke D Lavis; Timothée Lionnet; Ibrahim I Cisse
Journal:  Elife       Date:  2016-05-03       Impact factor: 8.140

Review 7.  Organization and regulation of gene transcription.

Authors:  Patrick Cramer
Journal:  Nature       Date:  2019-08-28       Impact factor: 49.962

8.  Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories.

Authors:  Maïwen Caudron-Herger; Peter R Cook; Karsten Rippe; Argyris Papantonis
Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

9.  Insulin promoter in human pancreatic β cells contacts diabetes susceptibility loci and regulates genes affecting insulin metabolism.

Authors:  Xing Jian; Gary Felsenfeld
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-30       Impact factor: 12.779

Review 10.  Liquid-liquid phase separation in human health and diseases.

Authors:  Bin Wang; Lei Zhang; Tong Dai; Ziran Qin; Huasong Lu; Long Zhang; Fangfang Zhou
Journal:  Signal Transduct Target Ther       Date:  2021-08-02
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