Literature DB >> 22012871

Signals for pre-mRNA cleavage and polyadenylation.

Bin Tian1, Joel H Graber.   

Abstract

Pre-mRNA cleavage and polyadenylation is an essential step for 3' end formation of almost all protein-coding transcripts in eukaryotes. The reaction, involving cleavage of nascent mRNA followed by addition of a polyadenylate or poly(A) tail, is controlled by cis-acting elements in the pre-mRNA surrounding the cleavage site. Experimental and bioinformatic studies in the past three decades have elucidated conserved and divergent elements across eukaryotes, from yeast to human. Here we review histories and current models of these elements in a broad range of species.
Copyright © 2011 John Wiley & Sons, Ltd.

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Year:  2011        PMID: 22012871      PMCID: PMC4451228          DOI: 10.1002/wrna.116

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  101 in total

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Authors:  E Beaudoing; S Freier; J R Wyatt; J M Claverie; D Gautheret
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Authors:  José Manuel Pérez-Cañadillas
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3.  Molecular architecture of the human pre-mRNA 3' processing complex.

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Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

4.  Proliferating cells express mRNAs with shortened 3' untranslated regions and fewer microRNA target sites.

Authors:  Rickard Sandberg; Joel R Neilson; Arup Sarma; Phillip A Sharp; Christopher B Burge
Journal:  Science       Date:  2008-06-20       Impact factor: 47.728

5.  RNA recognition by the human polyadenylation factor CstF.

Authors:  Y Takagaki; J L Manley
Journal:  Mol Cell Biol       Date:  1997-07       Impact factor: 4.272

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Authors:  Z Guo; F Sherman
Journal:  Trends Biochem Sci       Date:  1996-12       Impact factor: 13.807

7.  Signals sufficient for 3'-end formation of yeast mRNA.

Authors:  Z Guo; F Sherman
Journal:  Mol Cell Biol       Date:  1996-06       Impact factor: 4.272

8.  Genomic detection of new yeast pre-mRNA 3'-end-processing signals.

Authors:  J H Graber; C R Cantor; S C Mohr; T F Smith
Journal:  Nucleic Acids Res       Date:  1999-02-01       Impact factor: 16.971

9.  PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes.

Authors:  Ju Youn Lee; Ijen Yeh; Ji Yeon Park; Bin Tian
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

10.  A physical and functional link between splicing factors promotes pre-mRNA 3' end processing.

Authors:  Stefania Millevoi; Adrien Decorsière; Clarisse Loulergue; Jason Iacovoni; Sandra Bernat; Michael Antoniou; Stéphan Vagner
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

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  105 in total

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Journal:  RNA       Date:  2012-05-30       Impact factor: 4.942

Review 2.  Readthrough transcription: How are DoGs made and what do they do?

Authors:  Anna Vilborg; Joan A Steitz
Journal:  RNA Biol       Date:  2016-02-09       Impact factor: 4.652

Review 3.  Tales of Detailed Poly(A) Tails.

Authors:  Angela L Nicholson; Amy E Pasquinelli
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4.  Alternative Polyadenylation of Mammalian Transcripts Is Generally Deleterious, Not Adaptive.

Authors:  Chuan Xu; Jianzhi Zhang
Journal:  Cell Syst       Date:  2018-06-06       Impact factor: 10.304

5.  Suboptimal RNA-RNA interaction limits U1 snRNP inhibition of canonical mRNA 3' processing.

Authors:  Junjie Shi; Yanhui Deng; Shanshan Huang; Chunliu Huang; Jinkai Wang; Andy Peng Xiang; Chengguo Yao
Journal:  RNA Biol       Date:  2019-07-07       Impact factor: 4.652

6.  Fine gene expression regulation by minor sequence variations downstream of the polyadenylation signal.

Authors:  Lidiya V Boldyreva; Lyubov A Yarinich; Elena N Kozhevnikova; Anton V Ivankin; Mikhail O Lebedev; Alexey V Pindyurin
Journal:  Mol Biol Rep       Date:  2021-01-31       Impact factor: 2.316

Review 7.  The polyadenylation code: a unified model for the regulation of mRNA alternative polyadenylation.

Authors:  Ryan Davis; Yongsheng Shi
Journal:  J Zhejiang Univ Sci B       Date:  2014-05       Impact factor: 3.066

8.  Codon usage biases co-evolve with transcription termination machinery to suppress premature cleavage and polyadenylation.

Authors:  Zhipeng Zhou; Yunkun Dang; Mian Zhou; Haiyan Yuan; Yi Liu
Journal:  Elife       Date:  2018-03-16       Impact factor: 8.140

9.  A Genome-Wide Epstein-Barr Virus Polyadenylation Map and Its Antisense RNA to EBNA.

Authors:  Vladimir Majerciak; Wenjing Yang; Jing Zheng; Jun Zhu; Zhi-Ming Zheng
Journal:  J Virol       Date:  2019-01-04       Impact factor: 5.103

10.  U1A regulates 3' processing of the survival motor neuron mRNA.

Authors:  Eileen Workman; Alex Veith; Daniel J Battle
Journal:  J Biol Chem       Date:  2013-12-20       Impact factor: 5.157

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