Literature DB >> 24791905

ImmPort: disseminating data to the public for the future of immunology.

Sanchita Bhattacharya1, Sandra Andorf, Linda Gomes, Patrick Dunn, Henry Schaefer, Joan Pontius, Patty Berger, Vince Desborough, Tom Smith, John Campbell, Elizabeth Thomson, Ruth Monteiro, Patricia Guimaraes, Bryan Walters, Jeff Wiser, Atul J Butte.   

Abstract

The immunology database and analysis portal (ImmPort) system is the archival repository and dissemination vehicle for clinical and molecular datasets created by research consortia funded by the National Institute of Allergy and Infectious Diseases Division of Allergy, Immunology, and Transplantation. With nearly 100 datasets now publicly available and hundreds of downloads per month, ImmPort is an important source for raw data and protocols from clinical trials, mechanistic studies, and novel methods for cellular and molecular measurements. To facilitate data transfer, templates for data representation and standard operating procedures have also been created and are also publicly available. ImmPort facilitates transparency and reproducibility in immunology research, serves as an important resource for education, and enables newly generated hypotheses and data-driven science.

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Year:  2014        PMID: 24791905     DOI: 10.1007/s12026-014-8516-1

Source DB:  PubMed          Journal:  Immunol Res        ISSN: 0257-277X            Impact factor:   2.829


  21 in total

1.  Drug development: Raise standards for preclinical cancer research.

Authors:  C Glenn Begley; Lee M Ellis
Journal:  Nature       Date:  2012-03-28       Impact factor: 49.962

2.  Immune profile of pediatric renal transplant recipients following alemtuzumab induction.

Authors:  Sacha A De Serres; Bechara G Mfarrej; Ciara N Magee; Fanny Benitez; Isa Ashoor; Mohamed H Sayegh; William E Harmon; Nader Najafian
Journal:  J Am Soc Nephrol       Date:  2011-11-03       Impact factor: 10.121

3.  A randomized double-blind, placebo controlled trial of steroid withdrawal after pediatric renal transplantation.

Authors:  M R Benfield; S Bartosh; D Ikle; B Warshaw; N Bridges; Y Morrison; W Harmon
Journal:  Am J Transplant       Date:  2009-07-28       Impact factor: 8.086

4.  Elucidation of seventeen human peripheral blood B-cell subsets and quantification of the tetanus response using a density-based method for the automated identification of cell populations in multidimensional flow cytometry data.

Authors:  Yu Qian; Chungwen Wei; F Eun-Hyung Lee; John Campbell; Jessica Halliley; Jamie A Lee; Jennifer Cai; Y Megan Kong; Eva Sadat; Elizabeth Thomson; Patrick Dunn; Adam C Seegmiller; Nitin J Karandikar; Christopher M Tipton; Tim Mosmann; Iñaki Sanz; Richard H Scheuermann
Journal:  Cytometry B Clin Cytom       Date:  2010       Impact factor: 3.058

5.  Discovery and preclinical validation of drug indications using compendia of public gene expression data.

Authors:  Marina Sirota; Joel T Dudley; Jeewon Kim; Annie P Chiang; Alex A Morgan; Alejandro Sweet-Cordero; Julien Sage; Atul J Butte
Journal:  Sci Transl Med       Date:  2011-08-17       Impact factor: 17.956

6.  Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease.

Authors:  Joel T Dudley; Marina Sirota; Mohan Shenoy; Reetesh K Pai; Silke Roedder; Annie P Chiang; Alex A Morgan; Minnie M Sarwal; Pankaj Jay Pasricha; Atul J Butte
Journal:  Sci Transl Med       Date:  2011-08-17       Impact factor: 17.956

7.  Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes.

Authors:  Keiichi Kodama; Momoko Horikoshi; Kyoko Toda; Satoru Yamada; Kazuo Hara; Junichiro Irie; Marina Sirota; Alexander A Morgan; Rong Chen; Hiroshi Ohtsu; Shiro Maeda; Takashi Kadowaki; Atul J Butte
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-12       Impact factor: 11.205

8.  Incidence of PTLD in pediatric renal transplant recipients receiving basiliximab, calcineurin inhibitor, sirolimus and steroids.

Authors:  R A McDonald; J M Smith; M Ho; R Lindblad; D Ikle; P Grimm; R Wyatt; M Arar; D Liereman; N Bridges; W Harmon
Journal:  Am J Transplant       Date:  2008-05       Impact factor: 8.086

9.  Towards a cytokine-cell interaction knowledgebase of the adaptive immune system.

Authors:  Shai S Shen-Orr; Ofir Goldberger; Yael Garten; Yael Rosenberg-Hasson; Patricia A Lovelace; David L Hirschberg; Russ B Altman; Mark M Davis; Atul J Butte
Journal:  Pac Symp Biocomput       Date:  2009

10.  Combination treatment with omalizumab and rush immunotherapy for ragweed-induced allergic rhinitis: Inhibition of IgE-facilitated allergen binding.

Authors:  Sven Klunker; Lavina R Saggar; Vicki Seyfert-Margolis; Adam L Asare; Thomas B Casale; Stephen R Durham; James N Francis
Journal:  J Allergy Clin Immunol       Date:  2007-07-12       Impact factor: 10.793

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  298 in total

1.  Immune modulators in disease: integrating knowledge from the biomedical literature and gene expression.

Authors:  Nophar Geifman; Sanchita Bhattacharya; Atul J Butte
Journal:  J Am Med Inform Assoc       Date:  2015-12-11       Impact factor: 4.497

2.  Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures.

Authors:  Helder I Nakaya; Thomas Hagan; Sai S Duraisingham; Eva K Lee; Marcin Kwissa; Nadine Rouphael; Daniela Frasca; Merril Gersten; Aneesh K Mehta; Renaud Gaujoux; Gui-Mei Li; Shakti Gupta; Rafi Ahmed; Mark J Mulligan; Shai Shen-Orr; Bonnie B Blomberg; Shankar Subramaniam; Bali Pulendran
Journal:  Immunity       Date:  2015-12-15       Impact factor: 31.745

Review 3.  Antiviral innate immunity through the lens of systems biology.

Authors:  Shashank Tripathi; Adolfo Garcia-Sastre
Journal:  Virus Res       Date:  2015-12-03       Impact factor: 3.303

Review 4.  Vaccinology in the era of high-throughput biology.

Authors:  Helder I Nakaya; Bali Pulendran
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-06-19       Impact factor: 6.237

5.  Development and validation of an immune-related gene pairs signature in colorectal cancer.

Authors:  Jianping Wu; Ying Zhao; Juanwen Zhang; Qianxia Wu; Weilin Wang
Journal:  Oncoimmunology       Date:  2019-04-15       Impact factor: 8.110

Review 6.  Drug repurposing from the perspective of pharmaceutical companies.

Authors:  Y Cha; T Erez; I J Reynolds; D Kumar; J Ross; G Koytiger; R Kusko; B Zeskind; S Risso; E Kagan; S Papapetropoulos; I Grossman; D Laifenfeld
Journal:  Br J Pharmacol       Date:  2017-05-18       Impact factor: 8.739

7.  Investigating the neuroimmunogenic architecture of schizophrenia.

Authors:  R Birnbaum; A E Jaffe; Q Chen; J H Shin; J E Kleinman; T M Hyde; D R Weinberger
Journal:  Mol Psychiatry       Date:  2017-05-09       Impact factor: 15.992

8.  Immune Escape in Breast Cancer During In Situ to Invasive Carcinoma Transition.

Authors:  Carlos R Gil Del Alcazar; Sung Jin Huh; Muhammad B Ekram; Anne Trinh; Lin L Liu; Francisco Beca; Xiaoyuan Zi; Minsuk Kwak; Helga Bergholtz; Ying Su; Lina Ding; Hege G Russnes; Andrea L Richardson; Kirsten Babski; Elizabeth Min Hui Kim; Charles H McDonnell; Jon Wagner; Ron Rowberry; Gordon J Freeman; Deborah Dillon; Therese Sorlie; Lisa M Coussens; Judy E Garber; Rong Fan; Kristie Bobolis; D Craig Allred; Joon Jeong; So Yeon Park; Franziska Michor; Kornelia Polyak
Journal:  Cancer Discov       Date:  2017-06-26       Impact factor: 39.397

9.  RImmPort: an R/Bioconductor package that enables ready-for-analysis immunology research data.

Authors:  Ravi D Shankar; Sanchita Bhattacharya; Chethan Jujjavarapu; Sandra Andorf; Jeffery A Wiser; Atul J Butte
Journal:  Bioinformatics       Date:  2017-04-01       Impact factor: 6.937

10.  Laboratory mice born to wild mice have natural microbiota and model human immune responses.

Authors:  Jasmin Herz; Brian G Vassallo; Stephan P Rosshart; Ashli Hunter; Morgan K Wall; Jonathan H Badger; John A McCulloch; Dimitrios G Anastasakis; Aishe A Sarshad; Irina Leonardi; Nicholas Collins; Joshua A Blatter; Seong-Ji Han; Samira Tamoutounour; Svetlana Potapova; Mark B Foster St Claire; Wuxing Yuan; Shurjo K Sen; Matthew S Dreier; Benedikt Hild; Markus Hafner; David Wang; Iliyan D Iliev; Yasmine Belkaid; Giorgio Trinchieri; Barbara Rehermann
Journal:  Science       Date:  2019-08-01       Impact factor: 47.728

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