Literature DB >> 24780560

Inter-individual variation in DNA repair capacity: a need for multi-pathway functional assays to promote translational DNA repair research.

Zachary D Nagel1, Isaac A Chaim1, Leona D Samson2.   

Abstract

Why does a constant barrage of DNA damage lead to disease in some individuals, while others remain healthy? This article surveys current work addressing the implications of inter-individual variation in DNA repair capacity for human health, and discusses the status of DNA repair assays as potential clinical tools for personalized prevention or treatment of disease. In particular, we highlight research showing that there are significant inter-individual variations in DNA repair capacity (DRC), and that measuring these differences provides important biological insight regarding disease susceptibility and cancer treatment efficacy. We emphasize work showing that it is important to measure repair capacity in multiple pathways, and that functional assays are required to fill a gap left by genome wide association studies, global gene expression and proteomics. Finally, we discuss research that will be needed to overcome barriers that currently limit the use of DNA repair assays in the clinic.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DNA repair capacity; Multiplex assays; Personalized disease prevention and treatment

Mesh:

Year:  2014        PMID: 24780560      PMCID: PMC4071454          DOI: 10.1016/j.dnarep.2014.03.009

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  244 in total

1.  Rapid assessment of repair of ultraviolet DNA damage with a modified host-cell reactivation assay using a luciferase reporter gene and correlation with polymorphisms of DNA repair genes in normal human lymphocytes.

Authors:  Yawei Qiao; Margaret R Spitz; Zhaozheng Guo; Mohammad Hadeyati; Lawrence Grossman; Kenneth H Kraemer; Qingyi Wei
Journal:  Mutat Res       Date:  2002-11-30       Impact factor: 2.433

2.  Repair of oxidized bases in DNA bubble structures by human DNA glycosylases NEIL1 and NEIL2.

Authors:  Hong Dou; Sankar Mitra; Tapas K Hazra
Journal:  J Biol Chem       Date:  2003-09-30       Impact factor: 5.157

3.  Decline of nuclear and mitochondrial oxidative base excision repair activity in late passage human diploid fibroblasts.

Authors:  Guang-Ping Shen; Heather Galick; Masaaki Inoue; Susan S Wallace
Journal:  DNA Repair (Amst)       Date:  2003-06-11

4.  Reaction mechanism of human DNA repair excision nuclease.

Authors:  D Mu; D S Hsu; A Sancar
Journal:  J Biol Chem       Date:  1996-04-05       Impact factor: 5.157

5.  DNA repair and epidemiology of basal cell carcinoma.

Authors:  L Grossman; Q Wei
Journal:  Clin Chem       Date:  1995-12       Impact factor: 8.327

6.  Interindividual variation in the activity of O6-methyl guanine-DNA methyltransferase and uracil-DNA glycosylase in human organs.

Authors:  B Myrnes; K E Giercksky; H Krokan
Journal:  Carcinogenesis       Date:  1983-12       Impact factor: 4.944

7.  Population-based molecular prognosis of breast cancer by transcriptional profiling.

Authors:  Yan Ma; Yong Qian; Liang Wei; Jame Abraham; Xianglin Shi; Vincent Castranova; E James Harner; Daniel C Flynn; Lan Guo
Journal:  Clin Cancer Res       Date:  2007-04-01       Impact factor: 12.531

8.  Xeroderma pigmentosum group C gene expression is predominantly regulated by promoter hypermethylation and contributes to p53 mutation in lung cancers.

Authors:  Y-H Wu; J-H Tsai Chang; Y-W Cheng; T-C Wu; C-Y Chen; H Lee
Journal:  Oncogene       Date:  2007-02-26       Impact factor: 9.867

9.  Promoter hypermethylation of FANCF: disruption of Fanconi Anemia-BRCA pathway in cervical cancer.

Authors:  Gopeshwar Narayan; Hugo Arias-Pulido; Subhadra V Nandula; Katia Basso; Dorcas D Sugirtharaj; Hernan Vargas; Mahesh Mansukhani; Jeannine Villella; Larissa Meyer; Achim Schneider; Lutz Gissmann; Matthias Dürst; Bhavana Pothuri; Vundavalli V V S Murty
Journal:  Cancer Res       Date:  2004-05-01       Impact factor: 12.701

10.  Complex relationship between mismatch repair proteins and MBD4 during immunoglobulin class switch recombination.

Authors:  Fernando Grigera; Alfonso Bellacosa; Amy L Kenter
Journal:  PLoS One       Date:  2013-10-29       Impact factor: 3.240

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  27 in total

1.  Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry Enables Multiplex, Quantitative Pharmacodynamic Studies of Phospho-Signaling.

Authors:  Jeffrey R Whiteaker; Lei Zhao; Ping Yan; Richard G Ivey; Uliana J Voytovich; Heather D Moore; Chenwei Lin; Amanda G Paulovich
Journal:  Mol Cell Proteomics       Date:  2015-05-18       Impact factor: 5.911

2.  Pulmonary Arterial Hypertension Is Associated with Oxidative Stress-induced Genome Instability.

Authors:  Bennett Van Houten
Journal:  Am J Respir Crit Care Med       Date:  2015-07-15       Impact factor: 21.405

3.  Commentary: Life course epidemiology embraces geroscience.

Authors:  Luigi Ferrucci
Journal:  Int J Epidemiol       Date:  2016-08       Impact factor: 7.196

4.  In vivo measurements of interindividual differences in DNA glycosylases and APE1 activities.

Authors:  Isaac A Chaim; Zachary D Nagel; Jennifer J Jordan; Patrizia Mazzucato; Le P Ngo; Leona D Samson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-09       Impact factor: 11.205

5.  DNA Repair Capacity in Multiple Pathways Predicts Chemoresistance in Glioblastoma Multiforme.

Authors:  Zachary D Nagel; Gaspar J Kitange; Shiv K Gupta; Brian A Joughin; Isaac A Chaim; Patrizia Mazzucato; Douglas A Lauffenburger; Jann N Sarkaria; Leona D Samson
Journal:  Cancer Res       Date:  2016-10-28       Impact factor: 12.701

Review 6.  Towards precision prevention: Technologies for identifying healthy individuals with high risk of disease.

Authors:  Zachary D Nagel; Bevin P Engelward; David J Brenner; Thomas J Begley; Robert W Sobol; Jason H Bielas; Peter J Stambrook; Qingyi Wei; Jennifer J Hu; Mary Beth Terry; Caroline Dilworth; Kimberly A McAllister; Les Reinlib; Leroy Worth; Daniel T Shaughnessy
Journal:  Mutat Res       Date:  2017-04-06       Impact factor: 2.433

7.  Detection of the small oligonucleotide products of nucleotide excision repair in UVB-irradiated human skin.

Authors:  Jun-Hyuk Choi; Sueji Han; Michael G Kemp
Journal:  DNA Repair (Amst)       Date:  2019-12-05

Review 8.  Methodologies for detecting environmentally induced DNA damage and repair.

Authors:  Wentao Li; Aziz Sancar
Journal:  Environ Mol Mutagen       Date:  2020-02-29       Impact factor: 3.216

9.  Sensitive CometChip assay for screening potentially carcinogenic DNA adducts by trapping DNA repair intermediates.

Authors:  Le P Ngo; Norah A Owiti; Carol Swartz; John Winters; Yang Su; Jing Ge; Aoli Xiong; Jongyoon Han; Leslie Recio; Leona D Samson; Bevin P Engelward
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

10.  High-Throughput Screening Platform for Nanoparticle-Mediated Alterations of DNA Repair Capacity.

Authors:  Sneh M Toprani; Dimitrios Bitounis; Qiansheng Huang; Nathalia Oliveira; Kee Woei Ng; Chor Yong Tay; Zachary D Nagel; Philip Demokritou
Journal:  ACS Nano       Date:  2021-03-12       Impact factor: 15.881

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