| Literature DB >> 24777052 |
Alberto Ocana1, Francisco Vera-Badillo2, Mustafa Al-Mubarak2, Arnoud J Templeton2, Verónica Corrales-Sanchez1, Laura Diez-Gonzalez1, María D Cuenca-Lopez1, Bostjan Seruga3, Atanasio Pandiella4, Eitan Amir2.
Abstract
BACKGROUND: Aberrations in the phosphatidylinositol 3-kinase (PI3K)/mammalian target of rapamycin (mTOR)/AKT pathway are common in solid tumors. Numerous drugs have been developed to target different components of this pathway. However the prognostic value of these aberrations is unclear.Entities:
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Year: 2014 PMID: 24777052 PMCID: PMC4002433 DOI: 10.1371/journal.pone.0095219
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Schematic representation of the PI3K/mTOR pathway.
Characteristics of included studies.
| Article | Group Subtype | Tumor Subtype | Follow-up time |
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| PIK3CA mutations | Breast Cancer | Not reported |
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| PIK3CA mutations | Gynecological cancer | Not reported |
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| PIK3CA mutations | Breast Cancer | Median 12.8 years (range not reported) |
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| PIK3CA mutations | Breast Cancer | Not reported |
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| PIK3CA mutations | Breast Cancer | Median 4.2 years (range 0.2–6.5 years) |
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| PIK3CA mutations | Breast Cancer | Median, 6.4 years (range 0.1–9.3 years) |
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| mTOR or AKT activation | Breast Cancer | Median 6.5 years (range 0.6–18.4 years) |
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| mTOR or AKT activation | Non-small Cell Lung Cancer | Median 2.9 years (range 0.1–12.7 years) |
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| mTOR or AKT activation | Gastrointestinal tumors | Median 5.6 years (range 0.02–12.2 years) |
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| mTOR or AKT activation | Head and Neck Cancer | Mean 3.0 years (range not reported) |
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| mTOR or AKT activation | Gastrointestinal tumors | Mean 3.1 years (1.8–6.1 years) |
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| mTOR or AKT activation | Gynecological cancer | Mean 2.6 years (range 2.0–6.7 years) |
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| PTEN loss | Gastrointestinal tumors | Median 4.3 years (range 0.3–6.6 years) |
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| PTEN loss | Prostate Cancer | Median 16.0 years (range not reported) |
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| PTEN loss | Gastrointestinal tumors | Median 3.0 years (range not reported) |
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| PTEN loss | Gastrointestinal tumors | Not reported |
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| PTEN loss | Gynecological cancer | Not reported |
Prevalence and analyses of the molecular alterations of the PI3K/mTOR/AKT pathway.
| Article | Prevalence | Gene/protein | Method used | Cut-off or staining used |
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| N: 163; 46 missense mutation. 24 (53%) in exon 9 (Helicoidal); 21 (47%) in exon 20 (Kinase) | Exon 9: 12 E542K 11 E545K Exon 20: 20 H1047R | PCR amplification of exons 9 and 20 with flanking intronic sequences and single-strand conformation polymorphism (SSCP) followed by sequencing of positive cases | Both are included in the Kaplan-maier. Exon 9, helical is poor prognosis |
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| N: 94; 29 (30.9%) | Exon 9: 28; Exon 20: 16 | PCR amplifications of exon 9 and 20. Procuts were sequenced and detected by capillary electrophoresis. | Exon 9 E542G, A1625G; Exon 20 stp1060R, T3205A. No association with survival |
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| N: 590; 32.5% | PIK3CA mutations all cases for the three HS mutations | Mutation detection by Sequenom MassARRAY system. The iPLEX Gold Genotyping assay was used | Patients with PIK3CA H1047R mutated tumors have significant improvement in overall survival (P = 0.03) and breast cancer-specific survival (P = 0.004) |
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| PIK3CA mutation 34.5%; HER2: 22.7%; Basal-like tumors: 8.3% | 23 known mutations in P3KCA | PCR and Mass spectroscopy based approach evaluating single nucleotide polymorfisms | No difference in kinase domain versus all other (mainly helical domain) |
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| N: 250 (35%); Exon 7: 3%; Exon 9: 16%; Exon 20: 19% | PIK3CA mutations reported in human cancer occur in exon 7, 9 and 20 | Using PCR and fluorescen t(F)-SSCP | PIK3CA normal versus mutation (exon 7, 9, 20) |
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| N: 152 (26%) More than half in exon 20 | Mutations of PIK3CA reported in exon 4 (codon N345I, N345K), 7 (Codon C420R), 9 (E542K, E545A, E545G, E545G, E545K, Q546E), 20 (Codon H1047L, H1047R, H1047Y, H1047L, G1049R) | CR (in thermal cycler GeneAmp PCR System 9700). PCR products were sequenced using the ABI PRISM BigDye Terminator v3.1 cycle sequencing kit and 3730 DNA Analyzer | PIK3CA exon 20 mutations were independent risk factors for overall survival. |
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| N: 402 ER pos. Breast cancers. | AKT (pAKTSer-473) | pan-AKT(AbcamLid, Cambridge,UK); pAKT (Thr-308)(Cell Signallic Tecnology, beverly, USA); pAKT(Ser-473)(Biosource International Inc, CA,USA); Antibody specificity was checked by western blotting using a standard protocol | The cut-off value for high and low levels of pAKT expression is defined as above and below the median histoscore. |
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| N: 574 mTOR: Score 0: 22%, Score 2: 13%, Score 3: 11%, Score 4: 15%, Scored 5: 17%, Score 6: 22%. | mTor and pAKT | mTOR staining: incubated with a rabbit monoclonal antibody against mTOR (1∶100, clone 49F9). AKT: rabbit monoclonal antibody against pAkt (1∶50, clone 736E11) | A semiquantitative immunohistochemical score for intensity of staining and the extent of staining. Intensity, a score of 0 to 3 (corresponding to negative, weak, moderate, and strong positivity) Extent of staining was scored as 0 (0%), 1 (1–10%), 2 (11–50%), and 3 (51–100%), The sum of the intensity and extent score was used as the final score (0–6). Final score ≥3: positive. |
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| 412 gastric carcinomas, 47 adenomas, 197 non-neoplastic mucosa. mTOR: 66.3% of non-neoplastic mucosa, 70.1% adenomas,61.2% gastric carcinomas. | m-TOR , pS6 | Rabbit anti-mTOR antibody (Clone ID: Y392, 1612-1, Epitomics, USA; 1∶250) | The positive percentage of counted cells was graded semi-quantitatively according to a four-tier scoring system; negative 0–5%; weakly positive 6–25%, moderate positive 26–50%, strongly positive 51–100%. |
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| p-AKT 18% | p-Akt | Primary antibody to p-Akt (ser 473) Cell Signaling Technology (Beverly, MA) | AQUA scores for nuclear and cytoplasmic p-Akt. The lowest quartile was compared with the rest of the cohort. |
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| m-TOR: 50.8%; p-mTOR: 46,5% | mTOR, p-mTOR. (prognostic factor pmTOR) | mTOR (dilution 1∶50; clone Y391; Abcam), | A semiquantitative scoring system was used. An underexpression was defined as no staining or staining positivity in tumor tissue being less than matched normal tissue, a normal expression as staining positivity being similar to matched normal tissue, overexpression as staining positivity being higher than normal tissue. |
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| p-4EBP1 (47.1%) | p-4EBP1 | 4EBP1 Cell signaling Tech | Scored the percentage of positive cells and intensity of the staining, which was assessed semiquantitatively. Samples that showed any positivity were grouped together for statistical purposes |
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| N: 133 CRC group: 89.2% → 53.4% | PTEN | Primary anti-PTEN anti- body (1/200) at room temperature for 2 h | Positive: more than 10% |
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| N: 397 146 PTEN loss (36.8%). | PTEN | Rabbit monoclonal anti-PTEN antibody(clone D4.3,-9188, cell Signaling Technologies | Using this system, each spot of tumor tissue was scored as negative positive for PTEN protein by comparing staining in malignant gland with that of adjacent benign gland and/or stroma which provided an internal positive control within each tissue core. Staining was classified as negative if the intensity was markedly decreased or entirely negative |
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| PTEN strongly expressed in 62,9% colorectal cancer | PTEN | Anti-PTEN antibodies (clone 28116; Santa Cruz Biotechnology, Santa Cruz, CA,USA | The intensity of tissue staining was graded semi quantitatively on a 4 point scale (−,+,++,+++). Likewise, the proportion of cells stained was assessed on a 4 point scale (1: 0–15%; 2: 25–50%; 3: 50–85% and 4: 85–100% cell stained).Tissues were classified into strongly staining and weakly staining |
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| 47,5% PTEN underexpression | PTEN | Cell signalling biotechnology, Denver; MA | Western-blot |
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| 103 endometrial cancers, 36% negative PTEN | PTEN | A mouse monoclonal anti PTEN antibody, PTEN A2B1(Santa Cruz Biotechnology, Santa Cruz CA,USA) | A positive case was defined as one in which all of the tumor cells were stained, a heterogeneous case was defined as one with both staining and non-staining tumor cells and a negative case was defined as one with no staining of any tumor cells |
Figure 2Odds ratio (OR) for 5-year overall survival (OS) in all studies.
Forest plots of odds ratios for overall survival at 5 years based on activation of the PI3K/mTOR/AKT pathway. Odds ratios for each trial are represented by the squares, the size of the square represents the weight of the trial in the meta-analysis, and the horizontal line crossing the square represents the 95% confidence interval. The diamonds represent the estimated pooled effect based for each cohort individually (labeled subtotal) and for all cohorts together (labeled total).
Figure 3Odds ratio (OR) for 5-year overall survival (OS) according to the expression of different components of the PI3K/mTOR pathway (group subtype).
Forest plots of odds ratios for overall survival at 5 years split by subgroups defined by type of activation of the PI3K/mTOR/AKT pathway. Odds ratios for each trial are represented by the squares, the size of the square represents the weight of the trial in the meta-analysis, and the horizontal line crossing the square represents the 95% confidence interval. The diamonds represent the estimated pooled effect based for each cohort individually (labeled subtotal) and for all cohorts together (labeled total).